Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04782 and BPUM_2895
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:33
# Commandline: needle
# -asequence dna-align/BSNT_04782___yutC.1.24716.seq
# -bsequence dna-align/BPUM_2895.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04782___yutC-BPUM_2895.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04782___yutC-BPUM_2895.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04782___yutC
# 2: BPUM_2895
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 717
# Identity: 403/717 (56.2%)
# Similarity: 403/717 (56.2%)
# Gaps: 165/717 (23.0%)
# Score: 957.0
#
#
#=======================================
BSNT_04782___ 1 ATGAAACG-AACCGCTGTCAGCCTCTGC----CTGCTAACCGGACTATTA 45
||||| | |||..|||.||||| || ||.||.|.|...||.|||
BPUM_2895 1 ATGAA--GAAACAACTGACAGCC---GCAATTCTCCTCAGCATGCTTTTA 45
BSNT_04782___ 46 TCCGGGTGCGGAGGCGCAGGATTGGATAATGCACAAAATGTCCGG-AATC 94
..|||||||| |..||..||.|.|.|..|| |||| ||..
BPUM_2895 46 GGCGGGTGCG--------GCTTTCAATCAGGTATGAA----CCGGCAAGT 83
BSNT_04782___ 95 AGACGCAGAATC--AAACCAAACCCATTCATGTGTCGGACCGCAACGAGG 142
.||.|.|||.|| .||..|||.||||.|...|||||||.||..|.||.|
BPUM_2895 84 GGATGAAGATTCTTCAAGTAAAACCATCCGACTGTCGGATCGTCATGAAG 133
BSNT_04782___ 143 ------CTTTTAACA-GGCATAATGAGA-ACGAACA-ATTTGGCTATGTC 183
.||..|||| |.||.||..||| ||.|||| |...||.|||||.
BPUM_2895 134 GAAATAATTCCAACATGCCAGAAGCAGACACAAACAGAGCAGGGTATGTT 183
BSNT_04782___ 184 CGCTATCAAAGAGAACAATTTGACGGAGACCAGCAGAAAACGCCGGTGAT 233
||.|||||..|..|.||| .|.|||| |.||||||
BPUM_2895 184 CGTTATCAGCGCCAGCAA-GTAACGG-----ATCAGAAA----------- 216
BSNT_04782___ 234 GAACCGGGAAGAA-ACC-GCT-------------------CACATG--AT 260
|.||||| ||| ||| |.|||| ||
BPUM_2895 217 ------GAAAGAACACCTGCTTTAAATCGCGAGCATCTTGCCCATGTCAT 260
BSNT_04782___ 261 ATCAAGTTTAACGGTTCAGCTCCCCCATATTCAAGATGCTGCGACATTGG 310
..||||||||||.||.||.||.||..|.||..|||||||.||.|||.|.|
BPUM_2895 261 TACAAGTTTAACTGTGCAACTGCCAAACATCAAAGATGCAGCCACACTTG 310
BSNT_04782___ 311 TGACTGACCGA-GAAGC---GCTTGTCGTAT---ACA--AAACCGATTCT 351
||||.|| .|| ||.|| |.|||| |||| ||| ||||
BPUM_2895 311 TGACAGA-TGAGGATGCACTGATTGT-GTATCGAACAGGAAAC------- 351
BSNT_04782___ 352 AAAAACCGGGAGCTGA--CCGCCGATCAGGTGAAAAAAACAGCGGCTTCC 399
||||||||||| ||| |.||||||||.||.||.|||||..|||.|||.
BPUM_2895 352 AAAAACCGGGA--TGAATCTGCCGATCAAGTAAAGAAAACGACGGTTTCT 399
BSNT_04782___ 400 GTGATACCGCGATACTATCACGTGTATA--TTTCCGATAATCCAAACCAT 447
||..|.||.||.||.||||| |||||| |.||.|||||||||.|.||.
BPUM_2895 400 GTTCTCCCTCGTTATTATCA--TGTATACGTCTCTGATAATCCAGAGCAC 447
BSNT_04782___ 448 ATGCAGTCCGTCGAAAATT------------ACAGCAATCTCGGCTCTGG 485
.|.||.|||.|.|..|||| |.|.|||
BPUM_2895 448 TTTCAATCCATTGCCAATTTTTCACGTCTTCAAACCAA------------ 485
BSNT_04782___ 486 TTCAAGGGAT----ATCAGAGAGATCATGTCGGGGACGATTCAAGAAATG 531
||||.|.||| ||| |.|||.|..||...||.||||||.|||||
BPUM_2895 486 TTCACGTGATTTTGATC----AAATCTTAACGAAAACCATTCAACAAATG 531
BSNT_04782___ 532 AAAACCTCCCCGCAAGGAAGCCCTGTCTCAGAGAATGAAAATGCCAATGG 581
|||...|||||.|||||..|...|.|.||...|||.|||.||||
BPUM_2895 532 AAATATTCCCCTCAAGGTGGAGATATTTCTACGAAAGAAGATGC------ 575
BSNT_04782___ 582 AGAAACGCGTCAGGACATGAAAATCGATAGGA--ATGACAA-AAACGCC- 627
|||||.| |.||| |||...|||..|.| ||||.|| |||||||
BPUM_2895 576 --AAACGGG--ATGAC--GAATTCCGACCGTACCATGAGAAGAAACGCCC 619
BSNT_04782___ 628 ----------AGATGA- 633
|.||.|
BPUM_2895 620 CTTACGGCCAAAATTAA 636
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