Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04780 and BPUM_2893
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:32
# Commandline: needle
# -asequence dna-align/BSNT_04780___yutE.1.24716.seq
# -bsequence dna-align/BPUM_2893.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04780___yutE-BPUM_2893.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04780___yutE-BPUM_2893.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04780___yutE
# 2: BPUM_2893
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 475
# Identity: 303/475 (63.8%)
# Similarity: 303/475 (63.8%)
# Gaps: 80/475 (16.8%)
# Score: 926.5
#
#
#=======================================
BSNT_04780___ 1 ATGTATTTTGTTGACAGAAGCAAAATCGAGAAAACACTAGGGTTCTTCGA 50
||||||||.||.|||||||..|||||.||..|.|||.||.|.||.|||||
BPUM_2893 1 ATGTATTTCGTAGACAGAAAAAAAATTGAAGAGACATTACGTTTTTTCGA 50
BSNT_04780___ 51 GCACCAGCTGGCGCTAT---TTGACTCA-------CAAACAGACTGG--C 88
|.| ||..||| ||||..|| |||||| ||| .
BPUM_2893 51 GGA-------GCAATATGAGTTGATGCAGAGCCATCAAACA---TGGACA 90
BSNT_04780___ 89 AGTCTGAAATCGGGGAATTGGCACTTCAGCGTATAGGCCATCTGTTAATC 138
|||| .|.|.|.|.||...||.||..|.||.||.|..|||.||.|..||
BPUM_2893 91 AGTC--CACTAGAGAAAAAAGCGCTGGAACGAATTGTTCATTTGCTCGTC 138
BSNT_04780___ 139 GAATGCATTTTGGATACAGGCAATGACATGATTGACGGCTTTATTATGCG 188
|||||.|||.|.|||||.||.||||||||||||||.||||||||||||||
BPUM_2893 139 GAATGTATTCTTGATACGGGAAATGACATGATTGATGGCTTTATTATGCG 188
BSNT_04780___ 189 GGACCCGGGAAGCTATGACGACATTATGGATATACTTGTTGATGAGAAAG 238
.||.||.|||||||||||.|||||.||||||||.|||||.|||||.||.|
BPUM_2893 189 TGATCCAGGAAGCTATGATGACATCATGGATATTCTTGTCGATGAAAAGG 238
BSNT_04780___ 239 TTGTCACGGAAAAAGAGGGTGATGAGCTCAAGAAA--TTGATCGCCTACC 286
||||..|.|||.|.||.||...|.||||.|| ||| ||| ||.|.|.||
BPUM_2893 239 TTGTACCCGAAGAGGAAGGCAGTCAGCTGAA-AAAGCTTG-TCTCGTGCC 286
BSNT_04780___ 287 GCAAAAC----GT-----------------TGGTTCAACAGTATCTGCTC 315
||||||| || |||||||.||..|..||||
BPUM_2893 287 GCAAAACACTTGTGCAGCAATACCAAGAAGTGGTTCATCACGACTTGCT- 335
BSNT_04780___ 316 GC---TGA-CAGCGGCGAGCTTTACAGGCTGATCAAGGCGCATCAAACAG 361
|| ||| ||||| |||.||| |||| |
BPUM_2893 336 GCAGGTGATCAGCG-----------AGGTTGA-------GCAT------G 361
BSNT_04780___ 362 CTCTTCAAGACTTCCCGAAACGGATCAGAAGCTATTTGGAAACA-GAGCT 410
|.||.||.|..|||||.||.||.|||.|.|.|||.||.| |.|| |||||
BPUM_2893 362 CGCTACAGGTTTTCCCAAACCGCATCCGTACCTACTTAG-AGCAGGAGCT 410
BSNT_04780___ 411 AGGACCTGTTTCCGCGTTTAAATAA 435
.||.||.||.||.||||||||||||
BPUM_2893 411 TGGCCCAGTATCAGCGTTTAAATAA 435
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