Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04778 and BPUM_2891

See Amino acid alignment / Visit BSNT_04778 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:32
# Commandline: needle
#    -asequence dna-align/BSNT_04778___yutG.1.24716.seq
#    -bsequence dna-align/BPUM_2891___pgpA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04778___yutG-BPUM_2891___pgpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04778___yutG-BPUM_2891___pgpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04778___yutG
# 2: BPUM_2891___pgpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 523
# Identity:     366/523 (70.0%)
# Similarity:   366/523 (70.0%)
# Gaps:          44/523 ( 8.4%)
# Score: 1223.0
# 
#
#=======================================

BSNT_04778___      1 ATG--------TCAGAAAACGAACAATTCAGTCAGATGGAAGCTAA--AG     40
                     |||        |||..|.|.||||.|   ||| |||   ||   ||  ||
BPUM_2891___p      1 ATGCTGCATCATCACGAGATGAACGA---AGT-AGA---AA---AAACAG     40

BSNT_04778___     41 CAAGA-GCACGGATGAAGGAGCGCGGCGTTGAGGTATC------AGACAT     83
                     ||||| || ||..|..|.||.||.|||      |||||      |||.||
BPUM_2891___p     41 CAAGACGC-CGTTTACAAGAACGAGGC------GTATCCATTCAAGATAT     83

BSNT_04778___     84 TGCCGAGCTTGTCTTTTTTCTGCAGAAAAAATATCATCCGGATTTAACCA    133
                     .||.||.|||||||..|||.|.|||.|||||||||||||.|..|||..||
BPUM_2891___p     84 AGCAGACCTTGTCTACTTTTTACAGGAAAAATATCATCCTGGCTTAGACA    133

BSNT_04778___    134 TTGA-TGAATGCACGCTGAACGTCAATCGTGTTCTCGCAAAACGCGAGGT    182
                      ||| .|||||||..|..||.||..|.|||||..||||||||||.||.||
BPUM_2891___p    134 -TGACAGAATGCATCCACAATGTGGAGCGTGTCATCGCAAAACGAGAAGT    182

BSNT_04778___    183 GCAAAACGCGATTTTAACGGGCATTGAATTGGATGTTCTTGCTGAGCAGA    232
                     .|||||.|||||.|||||.|||||||||.|.||.||.||.||.|||||.|
BPUM_2891___p    183 TCAAAATGCGATATTAACAGGCATTGAACTAGACGTACTAGCCGAGCAAA    232

BSNT_04778___    233 AAAAACTGTCTGAACCGCTGCAAACGATGCTGGAAATAGATGAAAGCCTA    282
                     ||||||||.|.||.|||||.||..|.||.||.||||.|||.||||||||.
BPUM_2891___p    233 AAAAACTGACCGAGCCGCTTCAGTCTATTCTAGAAACAGACGAAAGCCTG    282

BSNT_04778___    283 TATGGAGTAGATGAAGTTCTGGCATTTTCCATTGTGAACATTTACGGATC    332
                     ||.||.||.||||||.||.|..|.|||.|.||.||.||.|||||.||.||
BPUM_2891___p    283 TACGGTGTTGATGAAATTTTATCCTTTGCTATCGTTAATATTTATGGTTC    332

BSNT_04778___    333 GATCGGGTTTACGAACTACGGTTACATCGACAAAGAAAAACCCGGAATCC    382
                     ||||||.||||||||.|||||.||.|||||.|||||||||||.|||||.|
BPUM_2891___p    333 GATCGGCTTTACGAATTACGGATATATCGATAAAGAAAAACCAGGAATTC    382

BSNT_04778___    383 TTAAAC----GATTGAATGATAAATCAACCGGTGAATGCCATACCTTTTT    428
                     |    |    ||.|.||.||||||||.||.||.||||||||.||||||||
BPUM_2891___p    383 T----CGGGAGACTCAACGATAAATCCACAGGAGAATGCCACACCTTTTT    428

BSNT_04778___    429 AGATGACATCGTCGGAGCGATTTCCGCCGCGGCTTCAAGCAGACTTGCTC    478
                     |||||||||.|||||.||.|||.|.||.||.||.||||||||..|.||.|
BPUM_2891___p    429 AGATGACATTGTCGGCGCCATTGCGGCAGCCGCATCAAGCAGGTTGGCAC    478

BSNT_04778___    479 ACCGCGCGCGGCATACAGAATAA    501
                     |..|.|.|.|..||...||||||
BPUM_2891___p    479 ATAGTGTGAGAAATGTGGAATAA    501


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