Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04774 and BPUM_2888
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:32
# Commandline: needle
# -asequence dna-align/BSNT_04774___hom.1.24716.seq
# -bsequence dna-align/BPUM_2888___thrA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04774___hom-BPUM_2888___thrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04774___hom-BPUM_2888___thrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04774___hom
# 2: BPUM_2888___thrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1320
# Identity: 983/1320 (74.5%)
# Similarity: 983/1320 (74.5%)
# Gaps: 36/1320 ( 2.7%)
# Score: 3522.0
#
#
#=======================================
BSNT_04774___ 1 TTGAAAGCGATTCGTGTAGGGCTTTTAGGTTTAGGTACCGTCGGAAGCGG 50
.||||.||.|||||.||.||.||.|||||.|||||.||.||.|||||.||
BPUM_2888___t 1 GTGAAGGCAATTCGAGTTGGACTATTAGGATTAGGAACAGTGGGAAGTGG 50
BSNT_04774___ 51 TGTCGTTAAAATTATTCAAGACCATCAGGATAAGCTTATGCATCAGGTCG 100
||||||.||.|||||.|||||.|||||||||||..|.|||||.||..|||
BPUM_2888___t 51 TGTCGTCAAGATTATCCAAGATCATCAGGATAAATTAATGCACCAAATCG 100
BSNT_04774___ 101 GCTGTCCGG--TTACGATAAAAAAAGTGCTTGTAAAAGATTTAGAGAAAA 148
||||||||| ||| |||.|||||||||||||.|...||...||.||||
BPUM_2888___t 101 GCTGTCCGGTATTA--ATACAAAAAGTGCTTGTGAGCAATCCCGATAAAA 148
BSNT_04774___ 149 AGAGAGAAGTAGATTTGCCGAAG-GAAGTGCTCACGACAGAAGTGTATGA 197
|||||||.||.|||.||.| ||| ||.||..||||.||.|||||.||.||
BPUM_2888___t 149 AGAGAGATGTGGATGTGGC-AAGAGAGGTCTTCACAACTGAAGTATACGA 197
BSNT_04774___ 198 TGTCATT-GATGATCCAGATGTTGATGTCGTCATCGAGGTGATCGGCGGC 246
|||.||| || ||||||||.||.||.|||.|.||.||.|||||.||||||
BPUM_2888___t 198 TGTGATTAGA-GATCCAGAAGTCGACGTCATTATTGAAGTGATGGGCGGC 246
BSNT_04774___ 247 GTTGAACAGACAAAACAATATTTGGTCGACGCGCTGA--GATCGAAAAAG 294
.|||||.||||||||||||||||..|.||.||..|.| || |||||||
BPUM_2888___t 247 ATTGAAGAGACAAAACAATATTTAATAGATGCATTAAATGA--GAAAAAG 294
BSNT_04774___ 295 CATGTTGTCACAGCAAACAAGGACTTAATGGCTGTGTACGGCTCCGAGCT 344
|||||..|.||.||.||.||.||.||||||||..|.||.||..|.|||||
BPUM_2888___t 295 CATGTCATTACCGCCAATAAAGATTTAATGGCACTTTATGGAACAGAGCT 344
BSNT_04774___ 345 GCTTGCC--GAAGCGAAGGAAAATGGATGCGATATCTACTTTGAAGCCAG 392
||..| |..|||||.||||||||.||.|||.|.||.|.||||||.||
BPUM_2888___t 345 --TTTACATGTGGCGAAAGAAAATGGCTGTGATCTTTATTATGAAGCAAG 392
BSNT_04774___ 393 TGTTGCCGGCGGGATTCCGATTCTGCGCACGTTAGAGGAAG-----GCCT 437
|||||||||.||.||||||||||||||.||.||.||||||| ||||
BPUM_2888___t 393 TGTTGCCGGAGGAATTCCGATTCTGCGTACTTTGGAGGAAGGATTAGCCT 442
BSNT_04774___ 438 CTCATCAGATCGAATTACAAAAATGATGGGAATTGTGAACGGCACAACAA 487
|| ||.||||||||.||.||||||||||||||||||||||||||.|
BPUM_2888___t 443 CT-----GACCGAATTACGAAGATGATGGGAATTGTGAACGGCACAACGA 487
BSNT_04774___ 488 ACTTTATCTTAACCAAAATGATCAAAGAGAAAAGCCCATACGAGGAAGTG 537
|.|||||.|||||.|||||||.|...||.||||||.||||.||.||.||.
BPUM_2888___t 488 ATTTTATTTTAACAAAAATGAACGTCGATAAAAGCGCATATGAAGATGTC 537
BSNT_04774___ 538 CTCAAGGAAGCGCAGGATCTCGGTTTTGCCGAAGCTGATCCGACTTCTGA 587
.|.||.|||||.||||||||.||.|||||.|||.|.|||||.||..||||
BPUM_2888___t 538 TTAAAAGAAGCACAGGATCTTGGCTTTGCAGAATCAGATCCAACAGCTGA 587
BSNT_04774___ 588 CGTGGAAGGGCTTGACGCCGCACGGAAAATGGCGATATTGGCGCGCCTCG 637
.||.|||||.||.||.||.|||.|||||||||||||..|.||..|.||||
BPUM_2888___t 588 TGTAGAAGGACTAGATGCAGCAAGGAAAATGGCGATTCTTGCAAGACTCG 637
BSNT_04774___ 638 GCTTCTCGATGAACGTGGATCTGGAAGACGTCAAAGTAAAGGGGATCTCC 687
|.||.||.|||||.|||||..|.||.||.||.||.||.|..||.|||||.
BPUM_2888___t 638 GATTTTCCATGAATGTGGAATTAGAGGATGTAAAGGTGAGAGGCATCTCT 687
BSNT_04774___ 688 CAAATTACAGACGAGGACATCAGCTTCAGCAAACGCCTCGGCTATACAAT 737
.|..||.|.||.||.||.||.|..|||||.|||||..|||||||.|||||
BPUM_2888___t 688 GACGTTTCTGATGAAGATATTAATTTCAGTAAACGATTCGGCTACACAAT 737
BSNT_04774___ 738 GAAGCTGATCGGGATTGCTCAGCGTGACGGCAGCAAAA-TCGAGGTCAGC 786
||||||.|||||.|||||.|||||.||||| ||.|||| |.||.|||||.
BPUM_2888___t 738 GAAGCTAATCGGAATTGCCCAGCGAGACGG-AGAAAAAGTAGAAGTCAGT 786
BSNT_04774___ 787 GTACAGCCGACACTGCTTCCTGACCATCATCCGCTTTCTGCTGTTCATAA 836
||.|||||.||..|.||||||||.||.|||||||||||..|.||..|.||
BPUM_2888___t 787 GTCCAGCCCACTTTACTTCCTGATCACCATCCGCTTTCATCGGTCAACAA 836
BSNT_04774___ 837 TGAGTTTAACGCTGTTTATGTATACGGCGAG-GCTGTCGGTGAGACGATG 885
|||.||.||.||.||.|||||.||.|| .|| |||||.||.||.||||||
BPUM_2888___t 837 TGAATTCAATGCGGTGTATGTCTATGG-AAGTGCTGTGGGAGAAACGATG 885
BSNT_04774___ 886 TTCTACGGGCCGGGAGCCGGAAGCATGCCGACAGCGACATCCGTTGTTTC 935
||.||.||.||.|||||.|||||..||||.||.||.||..|.|||||.||
BPUM_2888___t 886 TTTTATGGACCTGGAGCTGGAAGTCTGCCAACGGCAACCGCTGTTGTATC 935
BSNT_04774___ 936 TGACCTCGTCGCTGTCATGAAAAATATGCGCCTCGGTGTAACCGGCAACA 985
.|||.|.|||||.|||||||||||.||||||||.||.||.|.|||.|...
BPUM_2888___t 936 AGACTTAGTCGCAGTCATGAAAAACATGCGCCTTGGCGTGAACGGAAGTG 985
BSNT_04774___ 986 GCTTTGTCGGGCCGCAATATGAGAAAAATATGAAATCGCCGTCTGACATT 1035
|.|||.|.|..|||||.|.|||||||||.||.|||||.||.||.||..|.
BPUM_2888___t 986 GATTTATTGCACCGCAGTTTGAGAAAAAGATCAAATCACCATCGGAAGTA 1035
BSNT_04774___ 1036 TATGCACAGCAGTTTTTAAGAATTCATGTAAAAGATGAGGTTGGTTCATT 1085
|.|||.|||||.|||||||||||||||||.|.||||.|.|||||..||||
BPUM_2888___t 1036 TTTGCTCAGCAATTTTTAAGAATTCATGTGAGAGATCAAGTTGGAGCATT 1085
BSNT_04774___ 1086 CTCGAAAATTACATCTGTGTTCTCAGAGCGGGGCGTGAGCTTTGAAAAAA 1135
.||....|||||||||.|.||.||.||..|.||..|.|||||||||||.|
BPUM_2888___t 1086 TTCCCGCATTACATCTATTTTTTCTGAAAGAGGTATCAGCTTTGAAAAGA 1135
BSNT_04774___ 1136 TCCTTCAGCTGCCAATTAAAGGCCATGATGAGTTAGCTGAAATCGTAATT 1185
||||||||||.||..|.|||||.|||||||||.|.||||||||.||.|||
BPUM_2888___t 1136 TCCTTCAGCTTCCTGTGAAAGGGCATGATGAGCTGGCTGAAATTGTGATT 1185
BSNT_04774___ 1186 GTCACACATCATACATCAGAAGCTGATTTCAGTGATATCCTGCAAAACCT 1235
.|.||.||.|..||.|||||||..||||||....|||||||||||||..|
BPUM_2888___t 1186 ATTACGCACCGGACCTCAGAAGAAGATTTCTCAAATATCCTGCAAAAATT 1235
BSNT_04774___ 1236 AAATGATTTGGA---AGTCGTTCAAGAAGTCAAAAGCACATATCGTGTAG 1282
|||.|||.|.|| .||.|||| ||||.||.|||||.||.||.||||
BPUM_2888___t 1236 AAACGATCTCGACGTGGTGGTTC---AAGTGAAGAGCACGTACCGAGTAG 1282
BSNT_04774___ 1283 AAGGGAACGGTTGGAGCTAA 1302
||||||||||||..||||.|
BPUM_2888___t 1283 AAGGGAACGGTTTAAGCTGA 1302
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