Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04767 and BPUM_2883

See Amino acid alignment / Visit BSNT_04767 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:31
# Commandline: needle
#    -asequence dna-align/BSNT_04767___yuzD.1.24716.seq
#    -bsequence dna-align/BPUM_2883.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04767___yuzD-BPUM_2883.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04767___yuzD-BPUM_2883.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04767___yuzD
# 2: BPUM_2883
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 342
# Identity:     232/342 (67.8%)
# Similarity:   232/342 (67.8%)
# Gaps:          30/342 ( 8.8%)
# Score: 715.0
# 
#
#=======================================

BSNT_04767___      1 ----ATGAAACCAGTC-ATGCTAAGCGTATACGGGGCAGA--AACCGTGT     43
                         ||.||||| ||| || ||....|||||.||...|||  .||  |.|
BPUM_2883          1 ATGAATCAAACC-GTCGAT-CTTTATGTATATGGAAGAGATGTAC--TTT     46

BSNT_04767___     44 GTGCGAGCTGTGTCAATATGCCGACAGCCAAGGATACATACGAGTGGCTT     93
                     |.||.|||||.||.|||.||||..|..|.||.||.||||..||||||.|.
BPUM_2883         47 GCGCTAGCTGCGTGAATCTGCCTTCTTCAAAAGACACATTTGAGTGGTTA     96

BSNT_04767___     94 GAGGCTGCGCTGAAAAGAAAATATCCAAATCAGCCTTTTGAAATGCAGTA    143
                     ||.||.|||.|.|||.||||||||||.||||||||.|||    .|||..|
BPUM_2883         97 GATGCAGCGTTAAAACGAAAATATCCGAATCAGCCATTT----CGCATCA    142

BSNT_04767___    144 CATCGATATTTA---TGAG---CCGCCTGACAATGAACATGCGAAAGAGC    187
                     |||  |||||.|   ||||   ||.||.||.||.||||| .|.||||...
BPUM_2883        143 CAT--ATATTGATATTGAGCACCCACCAGAAAACGAACA-CCAAAAGGAA    189

BSNT_04767___    188 TTG-CGGAAAAAATCAGAAATGACGAGTATTTTTATCCGCTTGTGCTCGT    236
                     ||| |.|||..|||.....||||.||.|..||||||||||||||..|.||
BPUM_2883        190 TTGTCTGAACGAATTCTTGATGATGAATTCTTTTATCCGCTTGTCTTAGT    239

BSNT_04767___    237 AGAAGACAAAATTGTCGGTGAAGGCAATCCAAAATTAAAAGACGTTTATG    286
                     .|||||..|||||||.||.|||||.||||||||||||||||||.|||||.
BPUM_2883        240 GGAAGATCAAATTGTTGGAGAAGGTAATCCAAAATTAAAAGACATTTATC    289

BSNT_04767___    287 AGGAAATGGAGAAGCATGGGTATACAGAAAACCGCTGA----    324
                     |.|||||||||||..|.||.||.||.||.|.|.| |||    
BPUM_2883        290 AAGAAATGGAGAAATACGGTTACACGGAGAGCAG-TGATTAA    330


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