Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02781 and BPUM_2882

See Amino acid alignment / Visit BSNT_02781 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:25
# Commandline: needle
#    -asequence dna-align/BSNT_02781.1.24716.seq
#    -bsequence dna-align/BPUM_2882.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02781-BPUM_2882.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02781-BPUM_2882.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02781
# 2: BPUM_2882
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 280
# Identity:     149/280 (53.2%)
# Similarity:   149/280 (53.2%)
# Gaps:          95/280 (33.9%)
# Score: 354.0
# 
#
#=======================================

BSNT_02781         1 ATGAATT-TCTACTTGCACCGTTCT-TTGGAAAGCCAAATGCCAA-TCAG     47
                     ||||||| |.||| ||.|.|..||| ||..|.|| |||||.|||| |.||
BPUM_2882          1 ATGAATTATTTAC-TGAAACAATCTCTTCAACAG-CAAATACCAATTGAG     48

BSNT_02781        48 CATTATATATATGAAGAAAGACGGA------ACGATTAG-TAAAAGAACG     90
                      ||.||.||||||||||||.|||||      ||||  || .||||     
BPUM_2882         49 -ATGATTTATATGAAGAAAAACGGAGAGTGCACGA--AGCGAAAA-----     90

BSNT_02781        91 ATTATTGTGAGACAGAAAAGCAAAACGAA------AATCAAAGCATTTTG    134
                     ||.|||||      ..||.|..|||||.|      .|||.||||.|.|||
BPUM_2882         91 ATCATTGT------CCAACGTCAAACGGACCAGCTCATCCAAGCGTATTG    134

BSNT_02781       135 TTTTTCGAAACAACA-GATCAGAACATTT--TTATTGGACTCTATCCT--    179
                     |||.|||||| ||.| |||.|||||.|||  |.|  .||||..|||||  
BPUM_2882        135 TTTATCGAAA-AAGACGATGAGAACGTTTCGTAA--AGACTGCATCCTTG    181

BSNT_02781       180 ------CTCCTGTGATTTTGTGAGAACAAATAAGCAAAATCTCTATTCTG    223
                           ||||             ||.|||||                 ||
BPUM_2882        182 CCCTTGCTCC-------------GATCAAAT-----------------TG    201

BSNT_02781       224 ---------------CAGGCCG----GTAA    234
                                    ||.||||    .|||
BPUM_2882        202 ACCCGTTCATCGGCACATGCCGTTTCATAA    231


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