Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04765 and BPUM_2881

See Amino acid alignment / Visit BSNT_04765 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:31
# Commandline: needle
#    -asequence dna-align/BSNT_04765___yutJ.1.24716.seq
#    -bsequence dna-align/BPUM_2881.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04765___yutJ-BPUM_2881.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04765___yutJ-BPUM_2881.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04765___yutJ
# 2: BPUM_2881
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1090
# Identity:     816/1090 (74.9%)
# Similarity:   816/1090 (74.9%)
# Gaps:          44/1090 ( 4.0%)
# Score: 2948.0
# 
#
#=======================================

BSNT_04765___      1 ATGAAAAAATTGGTCTTGATCGGCGGAGGTTACGGGAACATGCGTGTTCT     50
                     ||||||||.||.||||||||||||||||||||||||||.|||||.|||||
BPUM_2881          1 ATGAAAAATTTAGTCTTGATCGGCGGAGGTTACGGGAATATGCGGGTTCT     50

BSNT_04765___     51 TCATCGCTTATTGCCAAACCAGCTGCCTGATGATGTTTCAATCACGTTAA    100
                     .||.||||||||||||||.||..|.||||||||||||.|.|||||.||||
BPUM_2881         51 CCACCGCTTATTGCCAAATCAATTACCTGATGATGTTACTATCACATTAA    100

BSNT_04765___    101 TTGACAGAAATCCTTATCACTGCTTGAAAACAGAATATTATGCCCTTGCC    150
                     ||||..||||||||||.|||||.||.|||||||||||||||||.||.||.
BPUM_2881        101 TTGATCGAAATCCTTACCACTGTTTAAAAACAGAATATTATGCACTCGCT    150

BSNT_04765___    151 GCAGGCACAATTTCTGACCATCATATCAGAGTGTCATTCCCAGAGCACCC    200
                     ||.||.||.||.|||||.||.||.||..||||.|||||.||||||||.||
BPUM_2881        151 GCTGGAACGATCTCTGATCACCACATTCGAGTATCATTTCCAGAGCATCC    200

BSNT_04765___    201 TCGCCTGGATGTCCAATACGGTGA--TATCACATCAATTGATATTGTACA    248
                     ....||||||.|.|||||.||.||  ||..|.|  |||||||||||.|.|
BPUM_2881        201 GAAGCTGGATATTCAATATGGGGAAGTAGAAAA--AATTGATATTGAAAA    248

BSNT_04765___    249 AAAACAAGTGCTGTTCCAAGATCGTGAACCGATTTCTTACGATGACGCCG    298
                     .||||||.|..|.||....||.||||||||.|||.||||.||.|||.|.|
BPUM_2881        249 CAAACAAATCTTATTTAGCGACCGTGAACCCATTCCTTATGACGACACGG    298

BSNT_04765___    299 TAATCGGGCTCGGCTGTGAGGATAAATATCACAACGTGCCGGGAGCGCCT    348
                     |.||.||.|||||.||||||||.||.|||||.||.||.||.||.|||...
BPUM_2881        299 TGATTGGACTCGGTTGTGAGGACAAGTATCATAATGTCCCTGGTGCGAAA    348

BSNT_04765___    349 GA--ATTCACCTACAGTATTCAAACCATCGATCAGTCCCGCGAAACCTAC    396
                     ||  ||  ||.|||||.|||||||||||.||||||||..|..|.||.|||
BPUM_2881        349 GAGCAT--ACATACAGCATTCAAACCATTGATCAGTCAAGACATACGTAC    396

BSNT_04765___    397 CAAAAGCTGAATAATCTGAGCGCTAATGCCACCGTCGCCATTGTCGGAGC    446
                     .|.||..|.||.|||.||||.||...|||.||.||.|..||.|||||.||
BPUM_2881        397 AACAAATTAAACAATTTGAGTGCAGGTGCAACGGTTGGTATCGTCGGTGC    446

BSNT_04765___    447 -GGGCTTAAGCGGCGTTGAGCTTGCAAGTGAATTGAGAGAAAGCCGTGAT    495
                      ||.||| |||||.||.|||||.||.||||||||.|||||.|||||||.|
BPUM_2881        447 TGGACTT-AGCGGGGTAGAGCTAGCCAGTGAATTAAGAGAGAGCCGTGCT    495

BSNT_04765___    496 GACCTGAACATTATTTTGTTCGACCGCGGTAATCTCATTTTATCAAGCTT    545
                     ||..|.|||||||||.|.||||||||.||..|.||.|||.||||||||||
BPUM_2881        496 GATTTAAACATTATTCTTTTCGACCGTGGAGAGCTGATTCTATCAAGCTT    545

BSNT_04765___    546 TCCCGAGCGTTTAAGCAAATATGTGCAAAAATGGTTCGAAGAGCACGGTG    595
                     .||..|..|.|||||...||||||||||||.|||||.|||||..|.|..|
BPUM_2881        546 CCCAAAAAGATTAAGTTTATATGTGCAAAAGTGGTTTGAAGAAAATGACG    595

BSNT_04765___    596 TCCGCATTATTAACAGGGCAAATATCACAAAAGTAGAAGAAGGCGTTGTG    645
                     |....||.||||||.|.||.|||||.||.||.||.||||||||.|||||.
BPUM_2881        596 TAAAGATCATTAACTGTGCGAATATTACGAAGGTTGAAGAAGGTGTTGTT    645

BSNT_04765___    646 TATAACCACGATGATCCGATTTCTGCAGACGCCATCGTGTGGACAGCCGG    695
                     ||||||||.||||||.|.|||...|||||.|.||||||.||||||||.||
BPUM_2881        646 TATAACCATGATGATGCCATTGAAGCAGAGGTCATCGTATGGACAGCAGG    695

BSNT_04765___    696 CATCCAGCCAAACAAAGT----CGTCAGAGACTTAGATGTGGAGAAGGAC    741
                     .||.|||||||..|||||    ||  |||||  |.|||||.||.||||||
BPUM_2881        696 TATTCAGCCAAGTAAAGTGATACG--AGAGA--TGGATGTTGAAAAGGAC    741

BSNT_04765___    742 GCACAAGGGCGTATTGTATTAACGCCTCATCATAATCTTCCAGGTGATGA    791
                     ||||||||.||..|.||||||||.||||||||.|||||.||.||.|||||
BPUM_2881        742 GCACAAGGACGCGTCGTATTAACACCTCATCACAATCTCCCTGGAGATGA    791

BSNT_04765___    792 ACATCTGTACGTTGTCGGCGATTGCGCCAGCCTTCCTCATGCACCGAGCG    841
                     .||..|.||.|||||.||.||||||||.||.|||||.|||||.||.||.|
BPUM_2881        792 GCACGTCTATGTTGTGGGTGATTGCGCAAGTCTTCCGCATGCTCCAAGTG    841

BSNT_04765___    842 CCCAGCTGGCAGAGGCTCAAGCAGAGCAGATTGTCCAAATCT-TGCAAAA    890
                     |||||||.||.|||||.||.|||||.||.||||||| ||||| |||||||
BPUM_2881        842 CCCAGCTTGCCGAGGCGCAGGCAGAACAAATTGTCC-AATCTCTGCAAAA    890

BSNT_04765___    891 ACGCTGGAATGGGGA----AGCC-CTGCCTGA-----ATCAATGCCTCAG    930
                     |||||||||     |    |||| ||.|||||     ||     ||||||
BPUM_2881        891 ACGCTGGAA-----AAACGAGCCGCTTCCTGAGGCTTAT-----CCTCAG    930

BSNT_04765___    931 TTTAAGCTGAAAGGCGTCCTCGGTTCACTCGGAAAAAAAGCCGGCTTCGG    980
                     ||||||||.|||||.|||.|.||.||..|.||.||||||||.||||| .|
BPUM_2881        931 TTTAAGCTAAAAGGTGTCTTAGGATCTTTAGGGAAAAAAGCTGGCTT-TG    979

BSNT_04765___    981 GCTT-GTTGCTGACCGTCCGCTGATCGGCCGTGTTCCGCGTATGCTGAAA   1029
                     |||| ||.||.||.|||||.||..|.||.|||||.||..|..|.||.|||
BPUM_2881        980 GCTTAGTAGCAGATCGTCCACTTGTTGGTCGTGTACCTAGACTACTAAAA   1029

BSNT_04765___   1030 TCCGG-CTTGCTGTGGATGTATAAACACCATAACGGTTAA   1068
                     ||||| ||| ||.|||||||||||.||.||.||.||.|||
BPUM_2881       1030 TCCGGACTT-CTTTGGATGTATAAGCATCACAATGGCTAA   1068


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