Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04765 and BPUM_2881
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:31
# Commandline: needle
# -asequence dna-align/BSNT_04765___yutJ.1.24716.seq
# -bsequence dna-align/BPUM_2881.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04765___yutJ-BPUM_2881.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04765___yutJ-BPUM_2881.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04765___yutJ
# 2: BPUM_2881
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1090
# Identity: 816/1090 (74.9%)
# Similarity: 816/1090 (74.9%)
# Gaps: 44/1090 ( 4.0%)
# Score: 2948.0
#
#
#=======================================
BSNT_04765___ 1 ATGAAAAAATTGGTCTTGATCGGCGGAGGTTACGGGAACATGCGTGTTCT 50
||||||||.||.||||||||||||||||||||||||||.|||||.|||||
BPUM_2881 1 ATGAAAAATTTAGTCTTGATCGGCGGAGGTTACGGGAATATGCGGGTTCT 50
BSNT_04765___ 51 TCATCGCTTATTGCCAAACCAGCTGCCTGATGATGTTTCAATCACGTTAA 100
.||.||||||||||||||.||..|.||||||||||||.|.|||||.||||
BPUM_2881 51 CCACCGCTTATTGCCAAATCAATTACCTGATGATGTTACTATCACATTAA 100
BSNT_04765___ 101 TTGACAGAAATCCTTATCACTGCTTGAAAACAGAATATTATGCCCTTGCC 150
||||..||||||||||.|||||.||.|||||||||||||||||.||.||.
BPUM_2881 101 TTGATCGAAATCCTTACCACTGTTTAAAAACAGAATATTATGCACTCGCT 150
BSNT_04765___ 151 GCAGGCACAATTTCTGACCATCATATCAGAGTGTCATTCCCAGAGCACCC 200
||.||.||.||.|||||.||.||.||..||||.|||||.||||||||.||
BPUM_2881 151 GCTGGAACGATCTCTGATCACCACATTCGAGTATCATTTCCAGAGCATCC 200
BSNT_04765___ 201 TCGCCTGGATGTCCAATACGGTGA--TATCACATCAATTGATATTGTACA 248
....||||||.|.|||||.||.|| ||..|.| |||||||||||.|.|
BPUM_2881 201 GAAGCTGGATATTCAATATGGGGAAGTAGAAAA--AATTGATATTGAAAA 248
BSNT_04765___ 249 AAAACAAGTGCTGTTCCAAGATCGTGAACCGATTTCTTACGATGACGCCG 298
.||||||.|..|.||....||.||||||||.|||.||||.||.|||.|.|
BPUM_2881 249 CAAACAAATCTTATTTAGCGACCGTGAACCCATTCCTTATGACGACACGG 298
BSNT_04765___ 299 TAATCGGGCTCGGCTGTGAGGATAAATATCACAACGTGCCGGGAGCGCCT 348
|.||.||.|||||.||||||||.||.|||||.||.||.||.||.|||...
BPUM_2881 299 TGATTGGACTCGGTTGTGAGGACAAGTATCATAATGTCCCTGGTGCGAAA 348
BSNT_04765___ 349 GA--ATTCACCTACAGTATTCAAACCATCGATCAGTCCCGCGAAACCTAC 396
|| || ||.|||||.|||||||||||.||||||||..|..|.||.|||
BPUM_2881 349 GAGCAT--ACATACAGCATTCAAACCATTGATCAGTCAAGACATACGTAC 396
BSNT_04765___ 397 CAAAAGCTGAATAATCTGAGCGCTAATGCCACCGTCGCCATTGTCGGAGC 446
.|.||..|.||.|||.||||.||...|||.||.||.|..||.|||||.||
BPUM_2881 397 AACAAATTAAACAATTTGAGTGCAGGTGCAACGGTTGGTATCGTCGGTGC 446
BSNT_04765___ 447 -GGGCTTAAGCGGCGTTGAGCTTGCAAGTGAATTGAGAGAAAGCCGTGAT 495
||.||| |||||.||.|||||.||.||||||||.|||||.|||||||.|
BPUM_2881 447 TGGACTT-AGCGGGGTAGAGCTAGCCAGTGAATTAAGAGAGAGCCGTGCT 495
BSNT_04765___ 496 GACCTGAACATTATTTTGTTCGACCGCGGTAATCTCATTTTATCAAGCTT 545
||..|.|||||||||.|.||||||||.||..|.||.|||.||||||||||
BPUM_2881 496 GATTTAAACATTATTCTTTTCGACCGTGGAGAGCTGATTCTATCAAGCTT 545
BSNT_04765___ 546 TCCCGAGCGTTTAAGCAAATATGTGCAAAAATGGTTCGAAGAGCACGGTG 595
.||..|..|.|||||...||||||||||||.|||||.|||||..|.|..|
BPUM_2881 546 CCCAAAAAGATTAAGTTTATATGTGCAAAAGTGGTTTGAAGAAAATGACG 595
BSNT_04765___ 596 TCCGCATTATTAACAGGGCAAATATCACAAAAGTAGAAGAAGGCGTTGTG 645
|....||.||||||.|.||.|||||.||.||.||.||||||||.|||||.
BPUM_2881 596 TAAAGATCATTAACTGTGCGAATATTACGAAGGTTGAAGAAGGTGTTGTT 645
BSNT_04765___ 646 TATAACCACGATGATCCGATTTCTGCAGACGCCATCGTGTGGACAGCCGG 695
||||||||.||||||.|.|||...|||||.|.||||||.||||||||.||
BPUM_2881 646 TATAACCATGATGATGCCATTGAAGCAGAGGTCATCGTATGGACAGCAGG 695
BSNT_04765___ 696 CATCCAGCCAAACAAAGT----CGTCAGAGACTTAGATGTGGAGAAGGAC 741
.||.|||||||..||||| || ||||| |.|||||.||.||||||
BPUM_2881 696 TATTCAGCCAAGTAAAGTGATACG--AGAGA--TGGATGTTGAAAAGGAC 741
BSNT_04765___ 742 GCACAAGGGCGTATTGTATTAACGCCTCATCATAATCTTCCAGGTGATGA 791
||||||||.||..|.||||||||.||||||||.|||||.||.||.|||||
BPUM_2881 742 GCACAAGGACGCGTCGTATTAACACCTCATCACAATCTCCCTGGAGATGA 791
BSNT_04765___ 792 ACATCTGTACGTTGTCGGCGATTGCGCCAGCCTTCCTCATGCACCGAGCG 841
.||..|.||.|||||.||.||||||||.||.|||||.|||||.||.||.|
BPUM_2881 792 GCACGTCTATGTTGTGGGTGATTGCGCAAGTCTTCCGCATGCTCCAAGTG 841
BSNT_04765___ 842 CCCAGCTGGCAGAGGCTCAAGCAGAGCAGATTGTCCAAATCT-TGCAAAA 890
|||||||.||.|||||.||.|||||.||.||||||| ||||| |||||||
BPUM_2881 842 CCCAGCTTGCCGAGGCGCAGGCAGAACAAATTGTCC-AATCTCTGCAAAA 890
BSNT_04765___ 891 ACGCTGGAATGGGGA----AGCC-CTGCCTGA-----ATCAATGCCTCAG 930
||||||||| | |||| ||.||||| || ||||||
BPUM_2881 891 ACGCTGGAA-----AAACGAGCCGCTTCCTGAGGCTTAT-----CCTCAG 930
BSNT_04765___ 931 TTTAAGCTGAAAGGCGTCCTCGGTTCACTCGGAAAAAAAGCCGGCTTCGG 980
||||||||.|||||.|||.|.||.||..|.||.||||||||.||||| .|
BPUM_2881 931 TTTAAGCTAAAAGGTGTCTTAGGATCTTTAGGGAAAAAAGCTGGCTT-TG 979
BSNT_04765___ 981 GCTT-GTTGCTGACCGTCCGCTGATCGGCCGTGTTCCGCGTATGCTGAAA 1029
|||| ||.||.||.|||||.||..|.||.|||||.||..|..|.||.|||
BPUM_2881 980 GCTTAGTAGCAGATCGTCCACTTGTTGGTCGTGTACCTAGACTACTAAAA 1029
BSNT_04765___ 1030 TCCGG-CTTGCTGTGGATGTATAAACACCATAACGGTTAA 1068
||||| ||| ||.|||||||||||.||.||.||.||.|||
BPUM_2881 1030 TCCGGACTT-CTTTGGATGTATAAGCATCACAATGGCTAA 1068
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