Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04721 and BPUM_2870

See Amino acid alignment / Visit BSNT_04721 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:31
# Commandline: needle
#    -asequence dna-align/BSNT_04721___yuiB.1.24716.seq
#    -bsequence dna-align/BPUM_2870.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04721___yuiB-BPUM_2870.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04721___yuiB-BPUM_2870.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04721___yuiB
# 2: BPUM_2870
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 342
# Identity:     232/342 (67.8%)
# Similarity:   232/342 (67.8%)
# Gaps:          42/342 (12.3%)
# Score: 772.0
# 
#
#=======================================

BSNT_04721___      1 TTGATTAGTCTGCCAGTCGTAATCATCTCAATTGTTTTGTTTTTTGTCTT     50
                     .||||.|||.|.||||||||.||.||.||..||.||||.|||||.||.||
BPUM_2870          1 GTGATCAGTTTACCAGTCGTTATTATTTCCGTTATTTTATTTTTCGTGTT     50

BSNT_04721___     51 GTTTTTTGGCATCGGTTTCTTATTAAACATGCTGCTGAGAATGTCTTGGA    100
                     .||.||||||||.||.||.||..|.||.||||||||.||||||||.||||
BPUM_2870         51 ATTCTTTGGCATTGGCTTTTTGCTCAATATGCTGCTAAGAATGTCATGGA    100

BSNT_04721___    101 TTATGGCTGTGATTTATCCGATTGTATGCCTTTTCATTATCAGCAAAGAT    150
                     |.||||||.|..|.|||||.||||||||||||||||||||||.|||..|.
BPUM_2870        101 TAATGGCTATTTTATATCCAATTGTATGCCTTTTCATTATCAACAATCAA    150

BSNT_04721___    151 AAGCTGATCAGC-TATGTCCAGTCGCCGGGAGAATC--------CTTTGC    191
                     |||.||||| || |||||         |.|||||.|        ||||..
BPUM_2870        151 AAGATGATC-GCTTATGT---------GAGAGAACCGGGCATCGCTTTTT    190

BSNT_04721___    192 CAGCCTGTTT---------CATCGTGTCTTATCATTAGCGGCTGCCGATG    232
                     |||   ||.|         |||.||.|||     .|.||.||.||.|||.
BPUM_2870        191 CAG---GTATAGGAGACCGCATAGTCTCT-----CTCGCTGCGGCTGATA    232

BSNT_04721___    233 TGCTGATTTTAGTCAGCGGTTTGGCCGGCGCCATCGTGTCCGGTATAGCG    282
                     |..|.||.||..|.||||||.||...||.||.||.||.||.|||.|||..
BPUM_2870        233 TTATTATCTTGTTAAGCGGTCTGATTGGTGCAATTGTATCAGGTTTAGTC    282

BSNT_04721___    283 ATCAACATGC---TCAGAAAAAGAGGATATCAAATGTTTTAA    321
                     ||.|  ||||   || ||||||||||||||||||||||||||
BPUM_2870        283 ATTA--ATGCACTTC-GAAAAAGAGGATATCAAATGTTTTAA    321


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