Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04716 and BPUM_2866
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:30
# Commandline: needle
# -asequence dna-align/BSNT_04716___pepA.1.24716.seq
# -bsequence dna-align/BPUM_2866___pepA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04716___pepA-BPUM_2866___pepA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04716___pepA-BPUM_2866___pepA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04716___pepA
# 2: BPUM_2866___pepA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1557
# Identity: 1077/1557 (69.2%)
# Similarity: 1077/1557 (69.2%)
# Gaps: 120/1557 ( 7.7%)
# Score: 3505.0
#
#
#=======================================
BSNT_04716___ 1 ATGTTTT---------ATGCGGTTCAACAATCAGAGCATACAGAAACCCT 41
||||||| ||| |||...|.||||.|||.||.||
BPUM_2866___p 1 ATGTTTTTCTCGACAAATG---------AATTGCAACATAAAGATACACT 41
BSNT_04716___ 42 TGTGGTCGGGCTTTTTCAAAAAAGCCAGCTGACAGGAAAAGCGTTGGAAA 91
.|.|.||||.|||||||||||.|||||..|..||||||||||....||||
BPUM_2866___p 42 GGCGATCGGACTTTTTCAAAAGAGCCAATTATCAGGAAAAGCAAAAGAAA 91
BSNT_04716___ 92 TTGATGAAATGCTCGAAGGCC--ATCTGACACAGCTTTTAAAAGAGGGTG 139
|.||||||.|.||.|||||.| ||| ||..|..|.||||||||.||.|
BPUM_2866___p 92 TGGATGAATTACTTGAAGGACGAATC--ACTGAATTATTAAAAGAAGGCG 139
BSNT_04716___ 140 ATGTCTCTGCGAAACCGAATCAAGTATCAAAAGTATTCCCTCCATCTTCT 189
||.|.||..|.||||..|||||..|.||.||..|.||| |||||..||
BPUM_2866___p 140 ATATTTCATCTAAACGAAATCAGCTTTCGAAGTTTTTC---CCATCCCCT 186
BSNT_04716___ 190 G---CGGGTATGAAACGGATTTATTTCGTTGGTCTGGGGAGAGAAGCAAA 236
| |.||.||.|||||.||||||||.||.||.||.||||..|||.||.|
BPUM_2866___p 187 GAAACAGGCATCAAACGCATTTATTTTGTCGGCCTTGGGAAGGAATCAGA 236
BSNT_04716___ 237 TTATTCGTTTGAACAGGCGAAGGAATGTTTTGCCCA--TATTTTTCAAGC 284
|||..||||||||.||||.||.|||.|||||||.|| |||||...||||
BPUM_2866___p 237 TTACACGTTTGAAGAGGCAAAAGAAGGTTTTGCGCATTTATTTAGAAAGC 286
BSNT_04716___ 285 CATTCATAAAGATCGAAAACAAGAAACAG---CTGTCCTACTTGATACGT 331
|||||.|||||..|||.|||| |.| |.||..||||.|||||||
BPUM_2866___p 287 --TTCATCAAGATAAAAAGCAAG---CGGTTTCGGTTTTACTGGATACGT 331
BSNT_04716___ 332 TTATTTCGGAA--GACGTGCCTCCAGCC---GATGCCGCTCAT--GCTTT 374
||||| |||| ||..||||| ||| |||||.||.||| .||||
BPUM_2866___p 332 TTATT--GGAAAGGATTTGCCT---GCCCAAGATGCAGCCCATACCCTTT 376
BSNT_04716___ 375 AGCTGAGAGCTGCCTGCTTGCTTCCTATGAGGTGCAGGATTATAAGCACA 424
||||.||||||||..|.|||.|.|||||..|.||.||||.|||.||.|
BPUM_2866___p 377 --CTGAAAGCTGCCTTTTAGCTACATATGAATTACAAGATTTTAAACATA 424
BSNT_04716___ 425 AATCAAATGAGCCTGACAAACAA-------ATTGAAGCCGTGTATGTTGT 467
||.|||||||.||.| | ||||| ||.|||| |
BPUM_2866___p 425 AAACAAATGAACCGG-------ATCGCTTTATTGA------GTTTGTT-T 460
BSNT_04716___ 468 A-------ACAGATGAAGATAC-ACAGGAAGTGCAGGCGGGGCTTCGCGT 509
| ||.|||.|.||||| || .|||.|.|||||..|.||....||
BPUM_2866___p 461 ATGCAATGACGGATCATGATACGAC-TGAAATTCAGGCAAGTCTGAAAGT 509
BSNT_04716___ 510 CGGCCAGGCATACGGACAAGGGAC---AAATTCGGCTAGAACGCTTGTGA 556
.|||.|||..|||||||| |.| .|||||||||.|.||.||.||||
BPUM_2866___p 510 GGGCGAGGTCTACGGACA---GTCCGTCAATTCGGCTCGTACCCTCGTGA 556
BSNT_04716___ 557 ATATGCCGGGAAACATGCTGACAGCGACTGACCTCGCTTCGTATGCTGAA 606
|.||||||...||.|||||.|||.|..||||.||.||||||||.||.|.|
BPUM_2866___p 557 ACATGCCGCCGAATATGCTCACATCCTCTGATCTGGCTTCGTACGCGGCA 606
BSNT_04716___ 607 GAGCTTGCGGCGAAATATGATTTTGAGTGTGAGATATTGGAGAAATCAGA 656
||||||||....|||||.||.|||||...|||.||.||.||.|||..|.|
BPUM_2866___p 607 GAGCTTGCATATAAATACGAATTTGAAATTGAAATTTTAGATAAAGAACA 656
BSNT_04716___ 657 GATGGAAGAGCTCGGTATGGGCGGAATACTTGCGGTAAACCAAGGCTCCA 706
.||||||||||||||.||||||||.||.||.||.||.||...||||||.|
BPUM_2866___p 657 AATGGAAGAGCTCGGAATGGGCGGGATTCTAGCTGTCAATAGAGGCTCAA 706
BSNT_04716___ 707 CCGAACCGCCGAAAATGATTGTGTTGAAATATCAGGGCAAAAAGGAATGG 756
|.|||||.||.||..|.||.||..||||||||||.|||||..|.||||||
BPUM_2866___p 707 CAGAACCACCAAAGCTCATCGTTCTGAAATATCAAGGCAAGGAAGAATGG 756
BSNT_04716___ 757 GAAGACGTCGTCGGACTAGTCGGGAAAGGAATTACCTTTGACACAGGCGG 806
...|||||..|.||.||.|||||.|||||.||.||.|.|||.||.||.||
BPUM_2866___p 757 ACGGACGTGATTGGGCTTGTCGGTAAAGGCATCACATATGATACCGGTGG 806
BSNT_04716___ 807 CTACTCCATTAAAACGAA-ATCTGGAATTGTCGGCATGAAATCAGATATG 855
||| |.|||||||.|.|| |.|..|.||..|.||.||||||.|.||||||
BPUM_2866___p 807 CTA-TTCATTAAAGCCAAGAGCCAGTATGATTGGGATGAAAACTGATATG 855
BSNT_04716___ 856 GGAGGAGCAGCTGCGGTTCTCGGGGCTATGGAAACGATCGGAGAGCTTCG 905
||.||..||||..|.|||.|.||.||.|||||||..|||||.||.||.||
BPUM_2866___p 856 GGCGGCTCAGCGTCTGTTTTAGGTGCCATGGAAATCATCGGTGAACTGCG 905
BSNT_04716___ 906 TCCTGAGCAAAACGTGCTGTGC-GTTATTCCATCAACCGATAATATGATC 954
.||.||||||||.|| |..||| ||.|||.|.||||||||||||||||||
BPUM_2866___p 906 CCCAGAGCAAAATGT-CATTGCTGTCATTGCTTCAACCGATAATATGATC 954
BSNT_04716___ 955 TCCGGCGGGGCCATGAAGCCGGATGACGTGATCGTATCTTTAAGCGGAAA 1004
||.|..|..||||||||.|||||||||||.||.||.||..|.||.||.||
BPUM_2866___p 955 TCAGCTGATGCCATGAAACCGGATGACGTCATTGTGTCGCTTAGTGGTAA 1004
BSNT_04716___ 1005 AACAATAGAAATCCTTAATACGGATGCTGAAGGAAGGCTAGTGCTTGCAG 1054
||||||.||..|.||.|||||||||||.||.||..|.||.||..|.||||
BPUM_2866___p 1005 AACAATCGAGGTACTGAATACGGATGCAGAGGGTCGTCTTGTTTTAGCAG 1054
BSNT_04716___ 1055 ATGGCATTACATACGCGAAACAGCATGGCGCATCAGTTCTTGTCGATGTA 1104
||||..|.|||||.|||||||||||.||.||.||.||||||.|.||.||.
BPUM_2866___p 1055 ATGGGGTGACATATGCGAAACAGCACGGTGCCTCTGTTCTTATAGACGTG 1104
BSNT_04716___ 1105 GCTACGCTTACCGGCGGCGTCGTTGTGGCATTAGGAACAGAAACAACCGG 1154
||.||..|.||||||||.|||.||||||||.|.||||..||.|||||.||
BPUM_2866___p 1105 GCGACATTAACCGGCGGAGTCATTGTGGCACTTGGAAATGAGACAACAGG 1154
BSNT_04716___ 1155 TGCAATGACAAAT---GATCAAAGCT-TTTACCAGCAGGTAGCTGATGCT 1200
.|..|||||.||| |||.|| || |.|.|| |||.|....||.||.
BPUM_2866___p 1155 CGTCATGACGAATAACGATGAA--CTGTATGCC--CAGTTTAAAGAGGCA 1200
BSNT_04716___ 1201 GCACAAGAGTGCGGCGAGGCGATCTGGCAGCTGCCGATAACAGAGAAGGA 1250
.||.||||.|||||.||...|||.|||||||||||.||.||.||.||.||
BPUM_2866___p 1201 TCAGAAGAATGCGGAGAAATGATTTGGCAGCTGCCAATCACCGAAAAAGA 1250
BSNT_04716___ 1251 TAAAAAACGCGT--GAAAAGCAGCCAAATGGCGGATCTCAGCAATTCACC 1298
||||||.||||| |||| ||||.|||||||||||||||..||.|||||
BPUM_2866___p 1251 TAAAAAGCGCGTACGAAA--CAGCAAAATGGCGGATCTCAATAACTCACC 1298
BSNT_04716___ 1299 GGGACGCGAGGGACATGCGATTATGGCAGGAACGTTTCTTGGTGAATTCG 1348
.||.||.||.|||||||||||.|||||||||.|.||..||||||||||||
BPUM_2866___p 1299 AGGCCGTGATGGACATGCGATCATGGCAGGAGCATTCATTGGTGAATTCG 1348
BSNT_04716___ 1349 CTGAGTCAACACCTTGGGTTCACCTTGATATTGCAGGCACAGCGACTGCC 1398
|||||...||.||||||||||||.|.|||||||||||.|||||.|| ..|
BPUM_2866___p 1349 CTGAGAATACGCCTTGGGTTCACTTGGATATTGCAGGAACAGCCAC-AAC 1397
BSNT_04716___ 1399 AATAAAG-CAACCTGCTTCGGACCGGCCGGGGCTACTGGCGTTATGGCAA 1447
|..|||| |..|.|||||.||.||..|.||.||.||.||.||.||||.|.
BPUM_2866___p 1398 AGAAAAGCCTTCATGCTTTGGGCCAACAGGTGCGACAGGTGTGATGGTAC 1447
BSNT_04716___ 1448 GAACACTGGCTACACTTGCGGAGCGATTTACATTGGAAGAAGATAA-AAA 1496
|..||.||||.||..|||.|||..||||| ||||.||| |||
BPUM_2866___p 1448 GGTCATTGGCCACCTTTGTGGAAAGATTT---------GAAGGTAAGAAA 1488
BSNT_04716___ 1497 CGAGTAA 1503
|||
BPUM_2866___p 1489 ----TAA 1491
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