Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_04694 and BPUM_2860

See Amino acid alignment / Visit BSNT_04694 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:30
# Commandline: needle
#    -asequence dna-align/BSNT_04694.1.24716.seq
#    -bsequence dna-align/BPUM_2860.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04694-BPUM_2860.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04694-BPUM_2860.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04694
# 2: BPUM_2860
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 299
# Identity:     244/299 (81.6%)
# Similarity:   244/299 (81.6%)
# Gaps:          10/299 ( 3.3%)
# Score: 997.0
# 
#
#=======================================

BSNT_04694         1 ATGGCAGGATTAATTCGTGTCACACCCGAAGAGCTAAGAGCGATGGCGAA     50
                     |||.|||||.|.|||||.||.||.||.|||||.||||||||||..||.||
BPUM_2860          1 ATGTCAGGAATTATTCGCGTAACCCCAGAAGAACTAAGAGCGACCGCTAA     50

BSNT_04694        51 GCAATACGGCGTTGAAAGCCAAGAAGTATTAAATCAGGTTGATCGTTTAA    100
                     ||||||.||.||||||||.||||||||.|||||.||.|||||||||.|||
BPUM_2860         51 GCAATATGGTGTTGAAAGTCAAGAAGTGTTAAACCAAGTTGATCGTCTAA    100

BSNT_04694       101 ACCGAATGATCTCTGATTTGAAAAGCATGTGGGAAGGTGCTTCAAGCGAA    150
                     |..||||||||||.|||||.|||.|.|||||||||||||||||.||.|||
BPUM_2860        101 ATAGAATGATCTCAGATTTAAAAGGTATGTGGGAAGGTGCTTCTAGTGAA    150

BSNT_04694       151 GCGTTCGCAGATCAATACGAGCAGCTCAAACCTTCATTTATCAAAATGTC    200
                     |||||.||.|||||||||||||||.|.||.||||||||.|||||||||||
BPUM_2860        151 GCGTTTGCTGATCAATACGAGCAGTTAAAGCCTTCATTCATCAAAATGTC    200

BSNT_04694       201 AGATTTGCTTCA-AGATGTGAATCAG----CAGCTTGATCAAACAGCAAA    245
                     .|||.| .||.| |||||    ||||    ||||||||||||||.|||||
BPUM_2860        201 TGATCT-ATTAACAGATG----TCAGCAATCAGCTTGATCAAACGGCAAA    245

BSNT_04694       246 TACACTTGAGTCTACTGACCAAGACATCGCAAATCAAATCCGCGGATAA    294
                     |||||||||....|||||||||||||||||.|..|||||||||||.|||
BPUM_2860        246 TACACTTGAAAGCACTGACCAAGACATCGCCAGCCAAATCCGCGGCTAA    294


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.