Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_04675 and BPUM_2847

See Amino acid alignment / Visit BSNT_04675 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:27
# Commandline: needle
#    -asequence dna-align/BSNT_04675___yueH.1.24716.seq
#    -bsequence dna-align/BPUM_2847.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04675___yueH-BPUM_2847.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04675___yueH-BPUM_2847.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04675___yueH
# 2: BPUM_2847
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 365
# Identity:     167/365 (45.8%)
# Similarity:   167/365 (45.8%)
# Gaps:         142/365 (38.9%)
# Score: 461.5
# 
#
#=======================================

BSNT_04675___      0 --------------------------------------------------      0
                                                                       
BPUM_2847          1 TTGAAAGGGAATTCCTTTTCTGAAGCTGTCTTTTTTTATGGTACAATGGA     50

BSNT_04675___      1 ----------------------------------------ATGAAAATCA     10
                                                             ||||||||.|
BPUM_2847         51 TATGGAAGTAAGAAGGAAAAAGAGGTGTGAACAGAGCCAAATGAAAATTA    100

BSNT_04675___     11 GAAAAGCAAATATCA-ATACGCA-AACCGGAATGATC-ACGGACGTGTAT     57
                     ||||||||.|.|||| |..||.| ||||  ||.||.| || .|.||.|||
BPUM_2847        101 GAAAAGCACACATCACAAGCGGACAACC--AAAGACCTAC-AATGTATAT    147

BSNT_04675___     58 CTGCATGAAAACAGAAAAGAACTGCGCACGCTTGTAGCGGTACCGCAGCT    107
                     .|.||||||||.|.|||||||......||||||||.||.|||||..|..|
BPUM_2847        148 TTACATGAAAATAAAAAAGAATATAAAACGCTTGTTGCCGTACCTGATAT    197

BSNT_04675___    108 GGAGTGGAGCACGATCATTTCCT------ATGAAGAAGA-----TAA---    143
                     .||.|||||.|....||||.|.|      |||||.||||     |||   
BPUM_2847        198 TGAATGGAGTATCTCCATTGCGTACGAGGATGAAAAAGAGCAGCTAATCC    247

BSNT_04675___    144 ---------AGCAACTCTGCCTGAACGGCTGGAAGCGTCGTTGCGCCGGC    184
                              ||||    |.|||.||    |||||       .|.||.|  
BPUM_2847        248 ATACGCTCGAGCA----TTCCTTAA----TGGAA-------AGAGCAG--    280

BSNT_04675___    185 ATACAGAGGAAACCCCTGCTGGTGAGCTGGCCAAAAAAATCATTCATTGG    234
                     |.|||||.|||.|||      ||||.||.||...|||.||..|.||.|||
BPUM_2847        281 AAACAGACGAAGCCC------GTGAACTTGCACTAAAGATTGTGCACTGG    324

BSNT_04675___    235 GTAACAGAAATGTAA    249
                     ||.||||||||||||
BPUM_2847        325 GTCACAGAAATGTAA    339


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.