Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04672 and BPUM_2845

See Amino acid alignment / Visit BSNT_04672 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:27
# Commandline: needle
#    -asequence dna-align/BSNT_04672___yueJ.1.24716.seq
#    -bsequence dna-align/BPUM_2845___pncA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04672___yueJ-BPUM_2845___pncA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04672___yueJ-BPUM_2845___pncA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04672___yueJ
# 2: BPUM_2845___pncA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 605
# Identity:     384/605 (63.5%)
# Similarity:   384/605 (63.5%)
# Gaps:         106/605 (17.5%)
# Score: 1188.5
# 
#
#=======================================

BSNT_04672___      1 ATGAAAAAAGCACTTATTTGTATTGATTATACGAATGATTTTGTGGCGAG     50
                     |||...||||||.|.|||||||||||||||||...|||||||||.|| ||
BPUM_2845___p      1 ATGGGCAAAGCATTGATTTGTATTGATTATACAGTTGATTTTGTTGC-AG     49

BSNT_04672___     51 -TGACGGAAAATTGACCTGCGGGGAGCCCGGCAGAATGATTGAAGAGGCG     99
                      .||.|||||||||||.|||||..||||            ||.|.|||||
BPUM_2845___p     50 ACGATGGAAAATTGACATGCGGAAAGCC------------TGGACAGGCG     87

BSNT_04672___    100 ATCGTCAATTTAACCGAAGAATTCATCACAAA-----------CGGTGAT    138
                            |||.|.||.|||     ||||||.|           ||.|.||
BPUM_2845___p     88 -------ATTGAGCCTAAG-----ATCACAGAGATCACTTCTTCGTTTAT    125

BSNT_04672___    139 T----------AC---GTCGTATTAGCAGTAGATTCTCATGCTGAAGGGG    175
                     |          ||   |||||.||.|||||.|||..||||      |.||
BPUM_2845___p    126 TGATGAAGGGCACTTTGTCGTCTTTGCAGTCGATCATCAT------GAGG    169

BSNT_04672___    176 ATCAA------TATCACCCCGAAAC-CCGTCTTTTTCCTCCGCATAATAT    218
                     |.|||      |||||.||.||.|| ..|| |.|||||.||.||||||||
BPUM_2845___p    170 AGCAAGACCCTTATCATCCAGAGACAAAGT-TATTTCCGCCCCATAATAT    218

BSNT_04672___    219 AAAAGGCACGGAAGGAAAAGATCTGTACGGAAAGCT---TTTGCCTCTAT    265
                     ....||.||..|.||||..||.||.||.||.||.||   ||   |.||||
BPUM_2845___p    219 TCGCGGGACAAAGGGAATTGAACTTTATGGCAAACTAAGTT---CACTAT    265

BSNT_04672___    266 ATCAGAAACATGAACATGAGCCT------AATGTTTACTACATGGAAAAA    309
                     .||  |.||.|.||    |||.|      .||||.|||||.|||||||||
BPUM_2845___p    266 TTC--ACACGTCAA----AGCATTTAAAACATGTCTACTATATGGAAAAA    309

BSNT_04672___    310 ACGAGATATTCTGCTTTTGCGGGAACTGATTTAGAGCTCAAACTCAGAGA    359
                     ||.|||||.|||||||||||.||.|||.|.|||||..|.|||||..|.||
BPUM_2845___p    310 ACAAGATACTCTGCTTTTGCAGGCACTCAATTAGAAATGAAACTGCGCGA    359

BSNT_04672___    360 GCGGCAGATTGGC------GAACTGCACCTTGCCGGTGTCTGCACAGATA    403
                     |||      ||||      |||||.||..|.|||||.||.||.||.||||
BPUM_2845___p    360 GCG------TGGCATCACTGAACTTCATTTAGCCGGCGTATGTACCGATA    403

BSNT_04672___    404 TTTGTGTGTTGCATACAGCTGTTGACGCATATAACAAAGGTTTTCGGA-T    452
                     |||||||..|.||||||||||||||.||.||.||.||||| .||||.| |
BPUM_2845___p    404 TTTGTGTACTTCATACAGCTGTTGATGCGTACAATAAAGG-CTTCGAACT    452

BSNT_04672___    453 TGTTGTGCATAAACAAGCTGTTGCCAGCTTTAATCAGGAGGGGCACGCAT    502
                     |||..|.||..|..|.|||||.||.||.||||||.|.|.||||||||..|
BPUM_2845___p    453 TGTGATTCACGAGAATGCTGTAGCGAGTTTTAATGAAGCGGGGCACGAGT    502

BSNT_04672___    503 GGGCTCTTTCCCATTTTGCAAACAGCA-----TCGGAGCGCAAGTGGCAG    547
                     ||||.|||||.||.||||     ||||     |.||.|||.||||||...
BPUM_2845___p    503 GGGCACTTTCTCACTTTG-----AGCAGTCGCTTGGTGCGAAAGTGGTTA    547

BSNT_04672___    548 AGTAA    552
                     |||||
BPUM_2845___p    548 AGTAA    552


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