Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04671 and BPUM_2844
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:27
# Commandline: needle
# -asequence dna-align/BSNT_04671___yueK.1.24716.seq
# -bsequence dna-align/BPUM_2844___pncB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04671___yueK-BPUM_2844___pncB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04671___yueK-BPUM_2844___pncB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04671___yueK
# 2: BPUM_2844___pncB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1507
# Identity: 1115/1507 (74.0%)
# Similarity: 1115/1507 (74.0%)
# Gaps: 71/1507 ( 4.7%)
# Score: 4000.5
#
#
#=======================================
BSNT_04671___ 1 GTGTTAGAGTA-CGGATTTAAAGATGACAGCCTGTCATTACATACAGACC 49
||.|||.| ||| ||||..||.|||||..|.|||.||||||||||||
BPUM_2844___p 1 ---TTGGAGCATCGG-TTTATTGACGACAGTTTATCACTACATACAGACC 46
BSNT_04671___ 50 TTTATCAGATCAATATGGCGGAAACGTACTGGAGAGACGGCATTCATGAA 99
|||||||.||.||.|||||.||||||||.||||||||||||||||||||.
BPUM_2844___p 47 TTTATCAAATTAACATGGCAGAAACGTATTGGAGAGACGGCATTCATGAG 96
BSNT_04671___ 100 AAGAAAGCGATTTTTGAGCTGTTTTTCAGAAGGCTTCCGTTTGAAAATGG 149
|||||.||..|||||||.||.||.|||||||.||||||.|||||.|||||
BPUM_2844___p 97 AAGAAGGCAGTTTTTGAACTCTTCTTCAGAAAGCTTCCATTTGACAATGG 146
BSNT_04671___ 150 CTATGCCGTATTTGCGGGCTTGGAAAAAGCCATTGAATACTT---GGAAA 196
||..||.||||||||.||.||.||.|||||.||||||||.|| ||
BPUM_2844___p 147 CTTCGCTGTATTTGCTGGTTTAGAGAAAGCGATTGAATATTTATCGG--- 193
BSNT_04671___ 197 ATTTCAAGTTTACGGATAGCGATTTGAG-TTATTTACAGGATGAACTCGG 245
|||||...||.||.||.||.|||.| || .||||||.|.||.||||||||
BPUM_2844___p 194 ATTTCTCCTTCACCGAAAGTGATCT-AGCGTATTTAAAAGACGAACTCGG 242
BSNT_04671___ 246 GTATCATGAA--GATTTTATTGAATATTTGCGCGGCTTATCTTTTACAGG 293
.|||.| || |||||.|||||.|||||..||||.|||||.||||||||
BPUM_2844___p 243 TTATAA--AAGCGATTTCATTGATTATTTAAGCGGGTTATCCTTTACAGG 290
BSNT_04671___ 294 TTCACTTTACTCCATGAAAGAAGGAGAGCTCGTTTTTAACAATGAGCCGA 343
.||.|||.|.||.|||..||||||.||..|.||||||..|||||||||.|
BPUM_2844___p 291 CTCCCTTCATTCTATGCGAGAAGGCGAAATTGTTTTTGCCAATGAGCCAA 340
BSNT_04671___ 344 TTATGAGGGTGGAGGCACCCCTGGTAGAAGCGCAGCTGATTGAAACAGCT 393
|||||.|..|.||||||.|.||.||.|||||.|||||.||||||||.||.
BPUM_2844___p 341 TTATGCGCATTGAGGCAACGCTTGTCGAAGCCCAGCTAATTGAAACCGCC 390
BSNT_04671___ 394 TTGCTCAACATTGTGAACTATCAAACATTAATTGCAACAAAGGCTGCCCG 443
|||||.||.|||||.||||..||.||..|.||.||.||||||||.||.||
BPUM_2844___p 391 TTGCTAAATATTGTAAACTTCCAGACGCTGATAGCGACAAAGGCAGCTCG 440
BSNT_04671___ 444 GATTAAAGGCGTCATTGGTGATGAAGTTGCGCTTGAATTCGGAACAAGAC 493
|||||||||..||||||..||.||....||.||.|||||.||.|||||||
BPUM_2844___p 441 GATTAAAGGAATCATTGAAGACGAGACAGCACTAGAATTTGGGACAAGAC 490
BSNT_04671___ 494 GGGCGCACGAAATGGATGCGGCCATGTGGGGAGCGAGAGCAGC-CTTAAT 542
|.||.||.|||||||||||.||.|||||||||||.|||||.|| ||| ||
BPUM_2844___p 491 GTGCACATGAAATGGATGCTGCGATGTGGGGAGCAAGAGCGGCTCTT-AT 539
BSNT_04671___ 543 CGGCGGCTTT-AGCGCGACAAGCAATGTAAGAGCCGGAAAGCGCTTTAAT 591
|||||||||| || ||||||||.|||||..|.||.||.||||||||.||.
BPUM_2844___p 540 CGGCGGCTTTCAG-GCGACAAGTAATGTTCGTGCTGGGAAGCGCTTCAAC 588
BSNT_04671___ 592 ATCCCGGTTTCCGGCACACATGCGCATGCGCTTGTGCAGGCTTACCGCGA 641
|||||.||.||.||.||||||||.||.||.||||||||.||.||.|||||
BPUM_2844___p 589 ATCCCAGTGTCAGGAACACATGCTCACGCACTTGTGCAAGCATATCGCGA 638
BSNT_04671___ 642 TGAATATACAGCTTTCAAAAAATACGCGGAAACACATAAGGATTGCGTCT 691
|||||||||.||.||.||||||||.||.|||||.||||..||.||.||||
BPUM_2844___p 639 TGAATATACGGCATTTAAAAAATATGCTGAAACTCATACAGACTGTGTCT 688
BSNT_04671___ 692 TCTTAGTTGACACGTATGACACGCTTCGT----TCAGGCATGCCGAACGC 737
|.|||||.||.||||||||.|| ||| ||.||.||.|||||.||
BPUM_2844___p 689 TTTTAGTCGATACGTATGATAC----CGTGAGATCCGGTATTCCGAATGC 734
BSNT_04671___ 738 GATTAGGGTTGCCAAGGAATTCGGCGACCGCATTAATTTCATTGGCATCC 787
.||||.|||.||.||.||||||||.|||...||.|||||.|||||..||.
BPUM_2844___p 735 CATTAAGGTAGCGAAAGAATTCGGAGACAAGATCAATTTTATTGGTGTCA 784
BSNT_04671___ 788 GTCTGGACAGCGGCGATTTGGCGTACCTGTCAAAAAAAGCCCGGAAAATG 837
|.||.||.||.||.||..|.||.|||.||||.||||||||..|.|..|||
BPUM_2844___p 785 GACTAGATAGTGGTGACCTTGCCTACTTGTCTAAAAAAGCTAGAACGATG 834
BSNT_04671___ 838 CTTGATGAAGCAGGATTTACA-GATGCGAAGGTGATTGCTTCAAGCGATT 886
||.||||||||.||| ||.|| |||||.||.||.|||||.|||||.|||.
BPUM_2844___p 835 CTGGATGAAGCTGGA-TTCCATGATGCAAAAGTCATTGCATCAAGTGATC 883
BSNT_04671___ 887 TGGATGAGCACACCATTATGAATTTAAAGGCTCAGGGAGCGCGCATTGAT 936
|.|||||.||.|||||.|||||||||||.||.|||||.||....||||||
BPUM_2844___p 884 TTGATGAACATACCATCATGAATTTAAAAGCACAGGGTGCCAAAATTGAT 933
BSNT_04671___ 937 GTCTGGGGTGTCGGTACGAAGCTGATCACTGCCTATGACCAGCCGGCTCT 986
||.||||||||.||.||.||.||||||||.||.|.|||.|||||.|||||
BPUM_2844___p 934 GTGTGGGGTGTTGGGACAAAACTGATCACAGCATTTGATCAGCCAGCTCT 983
BSNT_04671___ 987 CGGCGCAGTTTATAAACTCGTTGCCATTGAAGAAGACGGGAAAATGGTC- 1035
|||.|||||.|||||.||.||..|.|||||| ||.|||||||
BPUM_2844___p 984 CGGTGCAGTGTATAAGCTTGTGTCGATTGAA--------GAGAATGGTCA 1025
BSNT_04671___ 1036 -------GACACGATCAAAATTTCGTCCAATCCTGAAAAAGTGACGACAC 1078
|||||.|||||||||||.|||||.||.||.||||||||.||||
BPUM_2844___p 1026 GATGAATGACACCATCAAAATTTCATCCAACCCAGAGAAAGTGACAACAC 1075
BSNT_04671___ 1079 CGGGCAGAAAGAAA----GTCTACCGCATTATTAATCAGTCCAACCATCA 1124
|||.|.|.|| ||.|||||||||||.|||||.|..||.|||||
BPUM_2844___p 1076 ----CAGGACGTAAACGTGTGTACCGCATTATCAATCAATTGAATCATCA 1121
BSNT_04671___ 1125 TTCTGAAGGCGACTATATTGCGCTTTATGATGAGCGGGTG-----AATGA 1169
.||.||.||.|||||.||||||||..|.||.|| .|.|| |.|||
BPUM_2844___p 1122 CTCAGAGGGTGACTACATTGCGCTCGAAGACGA--AGATGTTCATAGTGA 1169
BSNT_04671___ 1170 TCAGAAGCGGCTCAGAATGTTCCACCCGGTTCATACATTCATCAGCAAAT 1219
..|.|| |||.|.||||||||||||.||.||||||||.||||||||.|
BPUM_2844___p 1170 GGATAA---GCTAAAAATGTTCCACCCAGTGCATACATTTATCAGCAAGT 1216
BSNT_04671___ 1220 TTGTCACGAATTTTTATGCGAAGGATCTTCATGAGCTGATTTTTGAGAAA 1269
|||||||.||.|||...|||||||||||.||||..|.||||||.||..||
BPUM_2844___p 1217 TTGTCACAAACTTTGTGGCGAAGGATCTACATGTCCCGATTTTCGAACAA 1266
BSNT_04671___ 1270 GGTATTCTTTGCTACCAAAACCCTGAGATTTCAGAC-ATACAGCAG--TA 1316
||.|..|||...||..|.||.||.||.| ||||.|| ||.|| || ||
BPUM_2844___p 1267 GGAAAACTTGTATATGACAATCCGGATA-TTCAAACGATTCA--AGCCTA 1313
BSNT_04671___ 1317 TGTGCAGGATAACCTCAGCCTGCTTTGGGAGGAATATAAGAGAATCAGCA 1366
|||||||||.|.||||.|.||..|.||||||||||||||..|||||||||
BPUM_2844___p 1314 TGTGCAGGACAGCCTCGGACTTTTCTGGGAGGAATATAAACGAATCAGCA 1363
BSNT_04671___ 1367 AGCCGGAGGAATACCCGGTTGATTTAAGCGAGGACTGCTGGAGCAATAAA 1416
|.||.||.|||||.||.||.|||||.||..|..|.||||||...||.||.
BPUM_2844___p 1364 AACCAGAAGAATATCCAGTCGATTTGAGTAAAAAATGCTGGGATAACAAG 1413
BSNT_04671___ 1417 ATGCAGCGGATCCACGAAGTGAAAAGCAGAATTGAAGAAGAGCTTGAGGA 1466
||||||...||.||.||.|||||||..|.||||.||..|||||||.|.||
BPUM_2844___p 1414 ATGCAGTTTATTCATGACGTGAAAAATAAAATTAAACTAGAGCTTTATGA 1463
BSNT_04671___ 1467 AGAATAA 1473
|...|||
BPUM_2844___p 1464 AAGCTAA 1470
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