Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04671 and BPUM_2844

See Amino acid alignment / Visit BSNT_04671 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:27
# Commandline: needle
#    -asequence dna-align/BSNT_04671___yueK.1.24716.seq
#    -bsequence dna-align/BPUM_2844___pncB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04671___yueK-BPUM_2844___pncB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04671___yueK-BPUM_2844___pncB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04671___yueK
# 2: BPUM_2844___pncB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1507
# Identity:    1115/1507 (74.0%)
# Similarity:  1115/1507 (74.0%)
# Gaps:          71/1507 ( 4.7%)
# Score: 4000.5
# 
#
#=======================================

BSNT_04671___      1 GTGTTAGAGTA-CGGATTTAAAGATGACAGCCTGTCATTACATACAGACC     49
                        ||.|||.| ||| ||||..||.|||||..|.|||.||||||||||||
BPUM_2844___p      1 ---TTGGAGCATCGG-TTTATTGACGACAGTTTATCACTACATACAGACC     46

BSNT_04671___     50 TTTATCAGATCAATATGGCGGAAACGTACTGGAGAGACGGCATTCATGAA     99
                     |||||||.||.||.|||||.||||||||.||||||||||||||||||||.
BPUM_2844___p     47 TTTATCAAATTAACATGGCAGAAACGTATTGGAGAGACGGCATTCATGAG     96

BSNT_04671___    100 AAGAAAGCGATTTTTGAGCTGTTTTTCAGAAGGCTTCCGTTTGAAAATGG    149
                     |||||.||..|||||||.||.||.|||||||.||||||.|||||.|||||
BPUM_2844___p     97 AAGAAGGCAGTTTTTGAACTCTTCTTCAGAAAGCTTCCATTTGACAATGG    146

BSNT_04671___    150 CTATGCCGTATTTGCGGGCTTGGAAAAAGCCATTGAATACTT---GGAAA    196
                     ||..||.||||||||.||.||.||.|||||.||||||||.||   ||   
BPUM_2844___p    147 CTTCGCTGTATTTGCTGGTTTAGAGAAAGCGATTGAATATTTATCGG---    193

BSNT_04671___    197 ATTTCAAGTTTACGGATAGCGATTTGAG-TTATTTACAGGATGAACTCGG    245
                     |||||...||.||.||.||.|||.| || .||||||.|.||.||||||||
BPUM_2844___p    194 ATTTCTCCTTCACCGAAAGTGATCT-AGCGTATTTAAAAGACGAACTCGG    242

BSNT_04671___    246 GTATCATGAA--GATTTTATTGAATATTTGCGCGGCTTATCTTTTACAGG    293
                     .|||.|  ||  |||||.|||||.|||||..||||.|||||.||||||||
BPUM_2844___p    243 TTATAA--AAGCGATTTCATTGATTATTTAAGCGGGTTATCCTTTACAGG    290

BSNT_04671___    294 TTCACTTTACTCCATGAAAGAAGGAGAGCTCGTTTTTAACAATGAGCCGA    343
                     .||.|||.|.||.|||..||||||.||..|.||||||..|||||||||.|
BPUM_2844___p    291 CTCCCTTCATTCTATGCGAGAAGGCGAAATTGTTTTTGCCAATGAGCCAA    340

BSNT_04671___    344 TTATGAGGGTGGAGGCACCCCTGGTAGAAGCGCAGCTGATTGAAACAGCT    393
                     |||||.|..|.||||||.|.||.||.|||||.|||||.||||||||.||.
BPUM_2844___p    341 TTATGCGCATTGAGGCAACGCTTGTCGAAGCCCAGCTAATTGAAACCGCC    390

BSNT_04671___    394 TTGCTCAACATTGTGAACTATCAAACATTAATTGCAACAAAGGCTGCCCG    443
                     |||||.||.|||||.||||..||.||..|.||.||.||||||||.||.||
BPUM_2844___p    391 TTGCTAAATATTGTAAACTTCCAGACGCTGATAGCGACAAAGGCAGCTCG    440

BSNT_04671___    444 GATTAAAGGCGTCATTGGTGATGAAGTTGCGCTTGAATTCGGAACAAGAC    493
                     |||||||||..||||||..||.||....||.||.|||||.||.|||||||
BPUM_2844___p    441 GATTAAAGGAATCATTGAAGACGAGACAGCACTAGAATTTGGGACAAGAC    490

BSNT_04671___    494 GGGCGCACGAAATGGATGCGGCCATGTGGGGAGCGAGAGCAGC-CTTAAT    542
                     |.||.||.|||||||||||.||.|||||||||||.|||||.|| ||| ||
BPUM_2844___p    491 GTGCACATGAAATGGATGCTGCGATGTGGGGAGCAAGAGCGGCTCTT-AT    539

BSNT_04671___    543 CGGCGGCTTT-AGCGCGACAAGCAATGTAAGAGCCGGAAAGCGCTTTAAT    591
                     |||||||||| || ||||||||.|||||..|.||.||.||||||||.||.
BPUM_2844___p    540 CGGCGGCTTTCAG-GCGACAAGTAATGTTCGTGCTGGGAAGCGCTTCAAC    588

BSNT_04671___    592 ATCCCGGTTTCCGGCACACATGCGCATGCGCTTGTGCAGGCTTACCGCGA    641
                     |||||.||.||.||.||||||||.||.||.||||||||.||.||.|||||
BPUM_2844___p    589 ATCCCAGTGTCAGGAACACATGCTCACGCACTTGTGCAAGCATATCGCGA    638

BSNT_04671___    642 TGAATATACAGCTTTCAAAAAATACGCGGAAACACATAAGGATTGCGTCT    691
                     |||||||||.||.||.||||||||.||.|||||.||||..||.||.||||
BPUM_2844___p    639 TGAATATACGGCATTTAAAAAATATGCTGAAACTCATACAGACTGTGTCT    688

BSNT_04671___    692 TCTTAGTTGACACGTATGACACGCTTCGT----TCAGGCATGCCGAACGC    737
                     |.|||||.||.||||||||.||    |||    ||.||.||.|||||.||
BPUM_2844___p    689 TTTTAGTCGATACGTATGATAC----CGTGAGATCCGGTATTCCGAATGC    734

BSNT_04671___    738 GATTAGGGTTGCCAAGGAATTCGGCGACCGCATTAATTTCATTGGCATCC    787
                     .||||.|||.||.||.||||||||.|||...||.|||||.|||||..||.
BPUM_2844___p    735 CATTAAGGTAGCGAAAGAATTCGGAGACAAGATCAATTTTATTGGTGTCA    784

BSNT_04671___    788 GTCTGGACAGCGGCGATTTGGCGTACCTGTCAAAAAAAGCCCGGAAAATG    837
                     |.||.||.||.||.||..|.||.|||.||||.||||||||..|.|..|||
BPUM_2844___p    785 GACTAGATAGTGGTGACCTTGCCTACTTGTCTAAAAAAGCTAGAACGATG    834

BSNT_04671___    838 CTTGATGAAGCAGGATTTACA-GATGCGAAGGTGATTGCTTCAAGCGATT    886
                     ||.||||||||.||| ||.|| |||||.||.||.|||||.|||||.|||.
BPUM_2844___p    835 CTGGATGAAGCTGGA-TTCCATGATGCAAAAGTCATTGCATCAAGTGATC    883

BSNT_04671___    887 TGGATGAGCACACCATTATGAATTTAAAGGCTCAGGGAGCGCGCATTGAT    936
                     |.|||||.||.|||||.|||||||||||.||.|||||.||....||||||
BPUM_2844___p    884 TTGATGAACATACCATCATGAATTTAAAAGCACAGGGTGCCAAAATTGAT    933

BSNT_04671___    937 GTCTGGGGTGTCGGTACGAAGCTGATCACTGCCTATGACCAGCCGGCTCT    986
                     ||.||||||||.||.||.||.||||||||.||.|.|||.|||||.|||||
BPUM_2844___p    934 GTGTGGGGTGTTGGGACAAAACTGATCACAGCATTTGATCAGCCAGCTCT    983

BSNT_04671___    987 CGGCGCAGTTTATAAACTCGTTGCCATTGAAGAAGACGGGAAAATGGTC-   1035
                     |||.|||||.|||||.||.||..|.||||||        ||.||||||| 
BPUM_2844___p    984 CGGTGCAGTGTATAAGCTTGTGTCGATTGAA--------GAGAATGGTCA   1025

BSNT_04671___   1036 -------GACACGATCAAAATTTCGTCCAATCCTGAAAAAGTGACGACAC   1078
                            |||||.|||||||||||.|||||.||.||.||||||||.||||
BPUM_2844___p   1026 GATGAATGACACCATCAAAATTTCATCCAACCCAGAGAAAGTGACAACAC   1075

BSNT_04671___   1079 CGGGCAGAAAGAAA----GTCTACCGCATTATTAATCAGTCCAACCATCA   1124
                         |||.|.|.||    ||.|||||||||||.|||||.|..||.|||||
BPUM_2844___p   1076 ----CAGGACGTAAACGTGTGTACCGCATTATCAATCAATTGAATCATCA   1121

BSNT_04671___   1125 TTCTGAAGGCGACTATATTGCGCTTTATGATGAGCGGGTG-----AATGA   1169
                     .||.||.||.|||||.||||||||..|.||.||  .|.||     |.|||
BPUM_2844___p   1122 CTCAGAGGGTGACTACATTGCGCTCGAAGACGA--AGATGTTCATAGTGA   1169

BSNT_04671___   1170 TCAGAAGCGGCTCAGAATGTTCCACCCGGTTCATACATTCATCAGCAAAT   1219
                     ..|.||   |||.|.||||||||||||.||.||||||||.||||||||.|
BPUM_2844___p   1170 GGATAA---GCTAAAAATGTTCCACCCAGTGCATACATTTATCAGCAAGT   1216

BSNT_04671___   1220 TTGTCACGAATTTTTATGCGAAGGATCTTCATGAGCTGATTTTTGAGAAA   1269
                     |||||||.||.|||...|||||||||||.||||..|.||||||.||..||
BPUM_2844___p   1217 TTGTCACAAACTTTGTGGCGAAGGATCTACATGTCCCGATTTTCGAACAA   1266

BSNT_04671___   1270 GGTATTCTTTGCTACCAAAACCCTGAGATTTCAGAC-ATACAGCAG--TA   1316
                     ||.|..|||...||..|.||.||.||.| ||||.|| ||.||  ||  ||
BPUM_2844___p   1267 GGAAAACTTGTATATGACAATCCGGATA-TTCAAACGATTCA--AGCCTA   1313

BSNT_04671___   1317 TGTGCAGGATAACCTCAGCCTGCTTTGGGAGGAATATAAGAGAATCAGCA   1366
                     |||||||||.|.||||.|.||..|.||||||||||||||..|||||||||
BPUM_2844___p   1314 TGTGCAGGACAGCCTCGGACTTTTCTGGGAGGAATATAAACGAATCAGCA   1363

BSNT_04671___   1367 AGCCGGAGGAATACCCGGTTGATTTAAGCGAGGACTGCTGGAGCAATAAA   1416
                     |.||.||.|||||.||.||.|||||.||..|..|.||||||...||.||.
BPUM_2844___p   1364 AACCAGAAGAATATCCAGTCGATTTGAGTAAAAAATGCTGGGATAACAAG   1413

BSNT_04671___   1417 ATGCAGCGGATCCACGAAGTGAAAAGCAGAATTGAAGAAGAGCTTGAGGA   1466
                     ||||||...||.||.||.|||||||..|.||||.||..|||||||.|.||
BPUM_2844___p   1414 ATGCAGTTTATTCATGACGTGAAAAATAAAATTAAACTAGAGCTTTATGA   1463

BSNT_04671___   1467 AGAATAA   1473
                     |...|||
BPUM_2844___p   1464 AAGCTAA   1470


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