Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04670 and BPUM_2843
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:27
# Commandline: needle
# -asequence dna-align/BSNT_04670___yuxH.1.24716.seq
# -bsequence dna-align/BPUM_2843.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04670___yuxH-BPUM_2843.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04670___yuxH-BPUM_2843.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04670___yuxH
# 2: BPUM_2843
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1317
# Identity: 844/1317 (64.1%)
# Similarity: 844/1317 (64.1%)
# Gaps: 177/1317 (13.4%)
# Score: 2484.5
#
#
#=======================================
BSNT_04670___ 1 ATGAGGGTGTTTGTTGCAAGACAGCCTATTTTTAATAGAAAAGAACAGGT 50
.||||||||||||||||.|||||||||||||||||.|||||||||||.||
BPUM_2843 1 TTGAGGGTGTTTGTTGCGAGACAGCCTATTTTTAACAGAAAAGAACAAGT 50
BSNT_04670___ 51 TGTTGCTTATGAACTGCTGTATAGAGAAAGCGAAGAGAACGTGTATAGCG 100
.||..|.||.||.|||||.||||||||.||.|||...||....|||||||
BPUM_2843 51 CGTATCATACGAGCTGCTTTATAGAGATAGTGAAACCAATACATATAGCG 100
BSNT_04670___ 101 CTAAAGACGGCGATCAGGCAACAACAGATTTGGTGATCAACAGCTTTTTA 150
||.||||.||.||.||.||.|||||.||..|..|.||.|||||.||||||
BPUM_2843 101 CTGAAGATGGTGACCAAGCGACAACGGACCTCATTATTAACAGTTTTTTA 150
BSNT_04670___ 151 AACATCGGAATTGAGAAGCTGACGGAAGGGAAACGCTGTTTTGTTAATTT 200
||.|||||.||.||.|...||||.|||||.|||.|.||.|...|||||||
BPUM_2843 151 AATATCGGCATCGAAACATTGACAGAAGGCAAAAGATGCTACATTAATTT 200
BSNT_04670___ 201 TACGGAAAGCCTGATGTTTTCGAATCTTCCCACCTCCTTCAATCCGAAAC 250
.||.||||||.|..|.|..||..||||.|.|||||..||..|||||.|.|
BPUM_2843 201 CACCGAAAGCTTACTTTCGTCTGATCTGCTCACCTATTTTGATCCGCATC 250
BSNT_04670___ 251 AGCTTGTCATTGAAATCCTTGAAGATATACCGATCACGCCGGCCCTCATT 300
|||||||.||.||.||..|.|||.||.|.|||||.||.||.||.||.|||
BPUM_2843 251 AGCTTGTGATCGAGATATTAGAAAATGTCCCGATTACCCCAGCACTTATT 300
BSNT_04670___ 301 TCTAGATGCAAAGAATTGAAAAAAATGGGG-TATATGCTGGCGCTTGATG 349
...|||||.||.||||| |||||||||||| ||||.|.|.||.|||||||
BPUM_2843 301 ATGAGATGTAAGGAATT-AAAAAAATGGGGATATACGATTGCACTTGATG 349
BSNT_04670___ 350 ATTTTTATGCAATAAAC---CCGCA----AGATGAGGACTTACTGGAAAA 392
|.||||.| .|||.| .|.|| || |||..|.||.||.||..|
BPUM_2843 350 ACTTTTTT---CTAAGCGGATCACATTTCAG-TGACAAGTTGCTTGAGGA 395
BSNT_04670___ 393 ACTCATGAGCTAT---ATTGATATATTGAAAATTGATTTTCTCAAAACAA 439
||||.| |||| ||||||||.||.|||||.||.|||||.||.||.|
BPUM_2843 396 ACTCCT---CTATTGCATTGATATTTTAAAAATCGACTTTCTAAAGACCA 442
BSNT_04670___ 440 CA--CGAATGGAACGCAGAACAATTTTGCAAACCTA----------CGGC 477
|| .||| |||||.||||.||||.|.||.||||| ||.|
BPUM_2843 443 CATCGGAA--GAACGTAGAAAAATTCTACACACCTATAAAAAATATCGAC 490
BSNT_04670___ 478 TGCCGCGGCCTGATTTTTTTAGCGGAAAAAGTAGAGACCCGAAAAGAATA 527
|.| .|||..|.||.|||||.||.||.||.||||.||||||
BPUM_2843 491 TTC----------GTTTCCTTGCAGAAAAGGTGGAAACGCGAAGAGAATA 530
BSNT_04670___ 528 TAAACAGGCGGTCCAAGACGGCTTTCAATTATTCCAAGGCTACTTTTTCA 577
|.||.|.|||.|..|||.||||||.||.||.||.|||||.||.||.||.|
BPUM_2843 531 TGAAGAAGCGCTAGAAGCCGGCTTCCATTTGTTTCAAGGGTATTTCTTTA 580
BSNT_04670___ 578 GCGAGCCGCGCAT----CATCAG--CGGGCATGACCTATCGACTCA-TTT 620
|.|||| ||||| .||||| ||.|||| ||||||| || .||
BPUM_2843 581 GTGAGC--CGCATGTGATATCAGGACGAGCAT----TATCGAC-CAGCTT 623
BSNT_04670___ 621 CTATTCTTA-------CTATGAACTGCTTAACGAACTGAGTAAAGAGCAG 663
|.||.|.|| |||| |.||.||.|||||.||.||.||.
BPUM_2843 624 CCATGCGTATCACCAGCTAT-------TAAATGAGCTGAGCAAGGAACAA 666
BSNT_04670___ 664 CCTAACATAAAGCGT-GTGACAGAGTACATAGAGCGGGATTTATCACTGT 712
||.||.||..|| || ||.||..|.|..||.||..|.||..|.||.||.|
BPUM_2843 667 CCGAATATCCAG-GTCGTTACCCATTTTATTGAAAGTGACCTTTCGCTAT 715
BSNT_04670___ 713 CCTATCAAATTTTAAAATTTTTAAACTCATCCCACAGCCGTTTGAGCC-- 760
|.||.|||.|.||||||.|..|.||.||| .||.|..||||.|
BPUM_2843 716 CATACCAATTATTAAAAATGCTCAATTCA------GGCGGCATGAGACGC 759
BSNT_04670___ 761 ----AGAAAATTGAAAGCATTCAACAGGCCATTATGCTGCTGGGATTTAA 806
|..||||..||||.||.|..|||||.|||||.|||||.||.|||||
BPUM_2843 760 CTATATCAAATCAAAAGTATCCGGCAGGCGATTATTCTGCTTGGTTTTAA 809
BSNT_04670___ 807 TGAAATCAAACGGTGGATATATATTCTTTCCTTTAAGGATTTAAGCAGGA 856
||||||.|..||.|||||.|.|||||||||.|||||.||.|| ||
BPUM_2843 810 TGAAATTAGGCGTTGGATCTTTATTCTTTCATTTAAAGAATT------GA 853
BSNT_04670___ 857 AAGGGCATTCCAG------CAAG----CACGAAATCATTAAGATTTCTCT 896
|.| |||.|| |||| .|.|||||.|||||.||.||..|
BPUM_2843 854 ATG----TTCAAGCCAATTCAAGTCAAAAAGAAATTATTAAAATGTCCTT 899
BSNT_04670___ 897 GATAAGAGC-AAAGCTTTGCGAACTGTTGGCGA--------GAAAGACAT 937
.||..|.|| |||.| .||.||||||.|.|||| |||.||.|
BPUM_2843 900 CATTCGGGCGAAAAC-ATGTGAACTGATTGCGAGTCGTACCGAACGAGA- 947
BSNT_04670___ 938 TCCGGCCGCAGCCTGCTTCTTATATGCTGATCGGAATGTTTTCTCTCATA 987
|||.||.||.|||||||||||||..||.||||||||||||||.
BPUM_2843 948 -------GCACCCAGCCTCTTATATGCTGACAGGTATGTTTTCTCTCATT 990
BSNT_04670___ 988 GACACCCTCCT----GCATAGAGGAATAGAGGAAATTGTTCAAGAATTGC 1033
||.||.||..| |||.| .|.||.| |||.||||..||||..|||
BPUM_2843 991 GATACACTTGTCAGGGCAGA---TATTACA-GAACTTGTAAAAGAGCTGC 1036
BSNT_04670___ 1034 --CTTTAAAAGATGAAGTCGGGC-AAGCATTATTAGGCCATCAAAACGAC 1080
|||| ..|||||||| |||| |.|||.|..|.||..||.||||.||.
BPUM_2843 1037 CACTTT--CTGATGAAGT-GGGCGAGGCACTGCTTGGTTATGAAAATGAT 1083
BSNT_04670___ 1081 TACTACCAAATGCTTGAGCT---TGT---GAAATTAATTGAAAGCAACAA 1124
||.| || .|||.||| ||| .|||...||||||.|.||..|
BPUM_2843 1084 TATT--CA----TTTGTGCTAGATGTCGCCAAACGGATTGAACGAAATGA 1127
BSNT_04670___ 1125 CTGGGA-CA-------CTTGCTCGGAATTAGGCAATCAACTCGACAAAGA 1166
.||||| || .|.|.|.||||| |||...|||.|
BPUM_2843 1128 ATGGGATCATGAGATGTTAGATGGGAAT-----------CTCCCGAAACA 1166
BSNT_04670___ 1167 AGAAGCGTATGAATGTTATCTTGAGGCTCTGGAATGGTGTCAT--AATCT 1214
||||||.||.|.|||||||.|.||.||..|.|||||||||||| |||.|
BPUM_2843 1167 AGAAGCCTACGGATGTTATATAGAAGCCATTGAATGGTGTCATAAAATGT 1216
BSNT_04670___ 1215 TATGGA-CGCAAAATGA 1230
| ||.| ||.||
BPUM_2843 1217 T-TGAATCGTAA----- 1227
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