Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04661 and BPUM_2837
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:26
# Commandline: needle
# -asequence dna-align/BSNT_04661___comA.1.24716.seq
# -bsequence dna-align/BPUM_2837___comA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04661___comA-BPUM_2837___comA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04661___comA-BPUM_2837___comA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04661___comA
# 2: BPUM_2837___comA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 670
# Identity: 465/670 (69.4%)
# Similarity: 465/670 (69.4%)
# Gaps: 53/670 ( 7.9%)
# Score: 1500.5
#
#
#=======================================
BSNT_04661___ 1 ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCAC 50
|||||.||||||.|.||.||||||||.||||||||||||||||||||.||
BPUM_2837___c 1 ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGAC 50
BSNT_04661___ 51 CAAGACAATTTTGGAAACGGATTCGAATTTGTCTGTTGATTGTCTCAGTC 100
.||.|..|||||.|||.|.|||..|.|..|.||.||.||||||.|.||||
BPUM_2837___c 51 AAAAAGCATTTTAGAATCAGATCAGCAGCTATCAGTCGATTGTTTAAGTC 100
BSNT_04661___ 101 CTGAACCGAGC-GAA-CAG--TTTATCAAGCAGCATGATTTCTCGTCA-- 144
|||| .|| ||| |.| |||.|.|||..||||||.||.|| ||
BPUM_2837___c 101 CTGA----TGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTC--CATC 144
BSNT_04661___ 145 TATGATCTCATTTTAATGGATCTGAATCTAGGCGGCGAGGTCAATGGGAT 194
||||||.|.|||||.||||||.|.||||| |||.||..|||||||.||
BPUM_2837___c 145 TATGATGTGATTTTGATGGATTTAAATCT---CGGGGATATCAATGGAAT 191
BSNT_04661___ 195 GGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGT-AAAATTATC 243
|||..||.|.|||||.|||.||.||...||.|..|| .|| |||||.|||
BPUM_2837___c 192 GGACATTGCGAAACAAATTCTAGAAACCAACCAACA-AGTGAAAATCATC 240
BSNT_04661___ 244 GTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGC 293
.|.|||||.||.|||||.||.||.||||||||.||.||.||.|||||.||
BPUM_2837___c 241 ATTTATACAGGGTATGAAGTTGATGATTATTTTGAAGAGGCCATTCGGGC 290
BSNT_04661___ 294 GGGTCTGCACGGTGCCATCAGCAAAACGGAATCTAAAGAAAAGATCACCC 343
.||..||||||||||.||.||.|||||.||..|.|||||.||.||.|...
BPUM_2837___c 291 TGGATTGCACGGTGCAATTAGTAAAACAGAGACAAAAGACAAAATTATTG 340
BSNT_04661___ 344 AATACATATACCACGTACT-CAATGGAGAAATTTTAGTCGATTTTGCT-- 390
||||||||.|||.|..|.| ||| ||||||.|| ||| |||..|||
BPUM_2837___c 341 AATACATACACCGCACATTGCAA-GGAGAAGTT---GTC-ATTCAGCTAT 385
BSNT_04661___ 391 --TACTTTAAA-CAGCTGATGACTCAGCAAAAAACAAAGCC------GGC 431
|| |||||| .|..|.||..|.|||||..||..|||||| |||
BPUM_2837___c 386 CCTA-TTTAAAGAAATTAATTTCACAGCAGCAAGAAAAGCCAGAACAGGC 434
BSNT_04661___ 432 TCCTTCCTCTCAAAAAGA------ACAAGATGTGCTCACACCTAGAGAAT 475
.| |..||| ||.||.||| |.|||....||||.|
BPUM_2837___c 435 GC----------AGGAGACCGATCACGAGTTGT--TAACAGAGCGAGAGT 472
BSNT_04661___ 476 GCCTGATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCA 525
|.||.||.||...||||||.||||||||||..||.||||||||.||.||.
BPUM_2837___c 473 GTCTCATCCTGAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCT 522
BSNT_04661___ 526 GATGCCCTTCATTTAAGCAAGCGGTCCATTGAATACAGCTTGACATCGAT 575
||.|..||.|||||.|||||.||.||.|||||||||||||||||.||.||
BPUM_2837___c 523 GACGTGCTACATTTGAGCAAACGCTCGATTGAATACAGCTTGACGTCCAT 572
BSNT_04661___ 576 TTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATAGCGA 625
.||.||||||||||||||.||.||.||.||.||||||||.||.||.||.|
BPUM_2837___c 573 CTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAA 622
BSNT_04661___ 626 AATCAGACGGTGTACTTTAA 645
||||.||..||||.||.|||
BPUM_2837___c 623 AATCTGAAAGTGTGCTGTAA 642
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