Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04649 and BPUM_2827
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:25
# Commandline: needle
# -asequence dna-align/BSNT_04649___maeN.1.24716.seq
# -bsequence dna-align/BPUM_2827.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04649___maeN-BPUM_2827.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04649___maeN-BPUM_2827.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04649___maeN
# 2: BPUM_2827
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1405
# Identity: 952/1405 (67.8%)
# Similarity: 952/1405 (67.8%)
# Gaps: 125/1405 ( 8.9%)
# Score: 3111.0
#
#
#=======================================
BSNT_04649___ 1 ------------------ATGGGAGCAATTCCAAAAACGGGGACAATTTC 32
.||..|.|.|||.|| |||.|||
BPUM_2827 1 GTGGCTAATACACAACAATTGAAATCGATTACA--------GACGATT-- 40
BSNT_04649___ 33 ACCTGAGCAAAAAGACTCACAGGAGAAAAACCTGTTTCAAAAAATTTGGT 82
|||| |||.| |.||||.|.|.||.|..||.||...||
BPUM_2827 41 --CTGA-CAATA-----------ATAAAAGCGTTTTCCGTAAGATCATGT 76
BSNT_04649___ 83 CTTGGGAAATCGGTGTGATTCCTTTGCCATTATACACAGTATTAGCTGTT 132
|||||.||||.|||||.|||...||.||..|.||...||||.|.||.|..
BPUM_2827 77 CTTGGAAAATTGGTGTTATTGACTTACCTGTGTATTTAGTACTTGCAGCG 126
BSNT_04649___ 133 ATTATTATTCTTGCAGCCTATTACAATGAGCTGCCGGCAAATATGCTTGG 182
||||||.|...|||.||.||||..|||.|..|.||.||||||||||||||
BPUM_2827 127 ATTATTTTAACTGCCGCTTATTTTAATAAAATTCCAGCAAATATGCTTGG 176
BSNT_04649___ 183 CGGGTTTGCCATCATTATGATTCTTGGTG-TGTTTCTCGGAGACATAGGC 231
.||.||.||..|.||||||||| ||||.| |.||.||.|||||.|||||.
BPUM_2827 177 TGGTTTCGCTGTTATTATGATT-TTGGGGATTTTCCTTGGAGATATAGGA 225
BSNT_04649___ 232 CAACGCATACCGATATTGAAGGATATTGGCGGCCCTGCTATTTTATCTTT 281
|||||.||.||||||||.||.||||||||.||.||.||.|||.|.|||||
BPUM_2827 226 CAACGTATTCCGATATTAAAAGATATTGGTGGACCGGCGATTCTTTCTTT 275
BSNT_04649___ 282 GTTTGTTCCTTCATTTTTAGTCTTTTACAATGTACTGAATTC-AACATCT 330
.||.||.||.||.||..|.|||||||...||||.||||||.| ||| ||.
BPUM_2827 276 ATTCGTACCATCGTTCCTGGTCTTTTTTCATGTTCTGAATCCGAAC-TCG 324
BSNT_04649___ 331 TTAGACGCTGTAAC--CAACTTGATGAAAACGTCTAACTTCCTTTATTTC 378
||.||.||.||.|| | .||| |||||||||||.|||||||||||.|||
BPUM_2827 325 TTGGAAGCGGTTACGTC-TCTT-ATGAAAACGTCGAACTTCCTTTACTTC 372
BSNT_04649___ 379 TATATCGCTTGC-CTTGTTGTGGGAAGTATCCTCGGTATG-AACAGAATT 426
|||||..| ||| |||||.||.||.|||||.||.||.||| ||| |.|.|
BPUM_2827 373 TATATTTC-TGCTCTTGTAGTAGGTAGTATTCTTGGGATGCAAC-GTACT 420
BSNT_04649___ 427 GTTTTAATACAGGGGTTTATCAGAATGTTCGTTCCACTGGTTGCAGGAAC 476
||||||.||||.||..||||..|.|||||.|||||.||.|||||||||||
BPUM_2827 421 GTTTTAGTACAAGGCCTTATTCGTATGTTTGTTCCTCTTGTTGCAGGAAC 470
BSNT_04649___ 477 GATCGCGGCCGTTGCAGCCGGCATCCTTGTCGGATTTATTTTTGGCTATA 526
.||.||.||.||..|.|||||.||.|||||.||..||.|..||||.||.|
BPUM_2827 471 AATTGCAGCTGTGACTGCCGGAATTCTTGTTGGTCTTTTAGTTGGTTACA 520
BSNT_04649___ 527 GTGCCTATGATTCCTTTTTCTTTGTTGTTGTCCCGATTATTGCCGGGGGA 576
...|..||.||||.||.||||||.||.||||.||.||||||||.||.||.
BPUM_2827 521 CACCGCATCATTCGTTCTTCTTTATTATTGTTCCAATTATTGCTGGTGGT 570
BSNT_04649___ 577 ATAGGCGAAGGAATTTTGCCGCTTTCAATCGCCTACTCACAAATACTGGG 626
.|.||.|||||.||||||||..|.||.||.||.||.||||||||.||.||
BPUM_2827 571 GTTGGAGAAGGGATTTTGCCATTATCTATTGCTTATTCACAAATTCTTGG 620
BSNT_04649___ 627 CTCATCTGCTGATGT-ATTTGTGTCTCAGCTGGTTCCAGCAGCAATTATA 675
...|||.||.|| || |||..|.|||||..|..||||.||.||..|.||.
BPUM_2827 621 TGTATCAGCAGA-GTCATTAATTTCTCAATTAATTCCTGCTGCCGTCATT 669
BSNT_04649___ 676 GGAAATGTTTTTGCTATCATATGTGCAGCCTTAATGAAAAAGCTTGGCGA 725
||.||.||..||||.||.||.|||||.|.|..||||||.||||||||.||
BPUM_2827 670 GGGAACGTCATTGCCATTATCTGTGCTGGCGCAATGAAGAAGCTTGGTGA 719
BSNT_04649___ 726 TAAGCGTCCAGATCTAAACGGGAACGGACGTCTCGTAAAATCTAAAAAAG 775
.||.|||||.||.|||||||||||.||.|||||.||.|||||||||.|||
BPUM_2827 720 AAAACGTCCTGAACTAAACGGGAATGGTCGTCTTGTCAAATCTAAAGAAG 769
BSNT_04649___ 776 CAAATGAGATTTTCAATCAAAAAGAAGCC-------GAAGCAAAAATTGA 818
|||||||.|||||..|.| |||| ||..|||||.||||
BPUM_2827 770 CAAATGAAATTTTTGAAC-------AGCCTGATATGGATCCAAAAGTTGA 812
BSNT_04649___ 819 TTTCAAATTAATGGGAGCAGGAGTTCTGCTCGCGTGTACATTCTTTATTT 868
|||....||||||||.||.||.||.||..|.||.||||||...||.||||
BPUM_2827 813 TTTTGGGTTAATGGGTGCTGGTGTACTCGTTGCTTGTACAACGTTCATTT 862
BSNT_04649___ 869 TTGGCGGGTTATTGGAGAAA------TTCATCTTCATCCCGGGCGCGATC 912
||||.||.||||| ||||| ||||| ||.||.||..|.|||
BPUM_2827 863 TTGGTGGTTTATT--AGAAAGCTTTGTTCAT----ATTCCTGGTCCAATC 906
BSNT_04649___ 913 TTAATGATTATTTCAGC--TGCGGCTGTCAAGTATGCAAATATTCTTCCG 960
|||||||||.| | |||.||| .||..|||||| |||
BPUM_2827 907 TTAATGATTGT-----CCTTGCCGCT-----TTAATCAAATA--CTT--- 941
BSNT_04649___ 961 AAAA--------------AAATGGAAGAAGGCGCTTACCAGCTTTATAAG 996
||| |..||.||||.|||.|..|.|||.||||.|||
BPUM_2827 942 -AAACGTGATGCCTCAGCATTTGCAAGATGGCTCACAGCAGTTTTACAAG 990
BSNT_04649___ 997 TTTATTTCTTCAAGCTTTACATGGCCGCTGATGGTCGGTCTCGGCATCCT 1046
|||.|.||...||||||||||||||||||.|||||||||||.||.||.||
BPUM_2827 991 TTTGTATCAAGAAGCTTTACATGGCCGCTTATGGTCGGTCTAGGGATTCT 1040
BSNT_04649___ 1047 CTTTATTCCGTTGGATGACGTAGCGTCTGTGATTTCTATAC----CGTTT 1092
.|..|||||..|.|||||.|||||..|.|||||||||||.| |||||
BPUM_2827 1041 ATACATTCCACTTGATGATGTAGCAACAGTGATTTCTATTCCATTCGTTT 1090
BSNT_04649___ 1093 GTCATCATCTGTATTTCAGTTGTTATCGCGATGATTGGTTCTGGATATTT 1142
|| .|.|||||..|.||.|||.|.|..|||.||||||||||.||.||
BPUM_2827 1091 GT----GTATGTATCGCTGTCGTTCTTGGAATGGTTGGTTCTGGTTACTT 1136
BSNT_04649___ 1143 CGTAGGCAAGCTGATGAACATGTATCCGGTTGAATCCGCAATCGTTACCT 1192
|||.||.||..|||||||||||||.||.||.|||||.||.||.||.||..
BPUM_2827 1137 CGTTGGGAAATTGATGAACATGTACCCAGTAGAATCTGCGATTGTGACAG 1186
BSNT_04649___ 1193 GCTGCCACAGCGGCCTCGGCGGAACGGGTGATGTTGCCATTTTATCGGCA 1242
||||.|||||.||.||.|||||.||.|||||.||||||||..|.||.||.
BPUM_2827 1187 GCTGTCACAGTGGACTTGGCGGTACTGGTGACGTTGCCATCCTTTCAGCT 1236
BSNT_04649___ 1243 TCAGGAAGAATGGGCCTTATGCCGTTTGCCCAAATTTCAACCCGTCTCGG 1292
||.|||||||||||.||||||||.||.||.|||.||||.||.|||||.||
BPUM_2827 1237 TCTGGAAGAATGGGTCTTATGCCTTTCGCACAAGTTTCTACACGTCTTGG 1286
BSNT_04649___ 1293 CGGTGCAGGCACAGTTATTTGCGCGACAGTGCTGCTTCGTTTTTTCACTT 1342
|||.||||..||.||.||.||.||.|||.|..|.|||.|..|.||.||||
BPUM_2827 1287 CGGAGCAGCAACTGTGATCTGTGCAACAATCTTACTTAGAATGTTTACTT 1336
BSNT_04649___ 1343 CATAA 1347
.|
BPUM_2827 1337 AA--- 1338
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