Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04643 and BPUM_2821
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:22
# Commandline: needle
# -asequence dna-align/BSNT_04643___yufM.1.24716.seq
# -bsequence dna-align/BPUM_2821.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04643___yufM-BPUM_2821.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04643___yufM-BPUM_2821.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04643___yufM
# 2: BPUM_2821
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 728
# Identity: 489/728 (67.2%)
# Similarity: 489/728 (67.2%)
# Gaps: 73/728 (10.0%)
# Score: 1628.0
#
#
#=======================================
BSNT_04643___ 1 ---------------------------------ATGGTGGGTGAATTAAA 17
|||||.||.||..|.||
BPUM_2821 1 ATGATTAATGTGTTAATAGTAGAAGACGACCCAATGGTTGGGGAGCTGAA 50
BSNT_04643___ 18 TAAACGATACTTAAGCCAAATAGATGGCTTTCAGCTGAAAGGCATCGCTT 67
.|||||.|||||.|.||||||.||.||||||.|..|.||.||.|||||..
BPUM_2821 51 CAAACGCTACTTGACCCAAATCGAGGGCTTTGAATTAAAGGGAATCGCCA 100
BSNT_04643___ 68 CTTCCTTTCAAAGC--GCTCTGCATATTTTAGGCGAGCA----CCATATC 111
|.||.|||| ||| ||.|||.||||.||| ..|.|| |||| ||
BPUM_2821 101 CCTCTTTTC--AGCAGGCACTGGATATGTTA--AAAACAGAAGCCAT-TC 145
BSNT_04643___ 112 GACCTCATTTTGCTTGATATTTATATGCCGGGAAAAAACGGGCTGGAACT 161
|||||.|.||.||.||||||||||||||.|||.||||.||.||||.|.|
BPUM_2821 146 -ACCTCGTATTACTCGATATTTATATGCCTGGACAAAATGGACTGGCATT 194
BSNT_04643___ 162 GCTGACGGAA--TTGAGAGCCCATAATGAAGCGGTTGACGTGATTGTCAT 209
..|..|.||| |.|..|| ||.|||.|..|||||||.||.||||||||
BPUM_2821 195 ATTATCAGAAATTCGCAAG--CAAAATCATTCGGTTGATGTTATTGTCAT 242
BSNT_04643___ 210 CTCAGCGGCCAGCGAGCTTGACGTAATCAAGAAAACACTTCGGTACGGAG 259
.|||||.||.|..||..|.|||||..||.|..||||..|.||..||||||
BPUM_2821 243 TTCAGCTGCAAATGAAGTCGACGTGGTCCAACAAACGATGCGAAACGGAG 292
BSNT_04643___ 260 CTGTCGATTATTTAATCAAACCGTTTGAATTTGAACGTTTCCAAACGGCT 309
|.||.||||||||||||||.||.|||||.|||||||||||||||.||||.
BPUM_2821 293 CCGTTGATTATTTAATCAAGCCATTTGAGTTTGAACGTTTCCAATCGGCA 342
BSNT_04643___ 310 TTGTCTGATTACAGACGAAAACAAAAGGTGTATTCAACCCATCGCAAC-A 358
.|.||.||.||.|.|||.|||||.....|||| ||| ||| |
BPUM_2821 343 CTCTCAGAATATAAACGGAAACACGCCTTGTA------CCA----AACGA 382
BSNT_04643___ 359 TGAGC---------CAAAAAGAACTGGACGCCGAGCTTTTTCAAAAGAAA 399
|||.| |||||.||..|.||.||..||||.|||||.||.|||
BPUM_2821 383 TGAACAGCATCTCGCAAAATGATTTAGATGCGAAGCTCTTTCATAAAAAA 432
BSNT_04643___ 400 GAAGCAACAGAAAAAGTGCAGCTTCCTAAAGGCCTGACAAAAAGCACGCT 449
|.||..||.||||||||.|..||.||.|||||||||||.||||||||.||
BPUM_2821 433 GCAGAGACGGAAAAAGTCCTTCTGCCAAAAGGCCTGACCAAAAGCACACT 482
BSNT_04643___ 450 GAAGCTGATCTGGTCCAGTATCCAGTCATTTGAAAATGAATCTTTTACGA 499
.||.||.||||||.|.|||||.||||||||.|...||.|..||||.||||
BPUM_2821 483 CAAACTCATCTGGACAAGTATTCAGTCATTCGGTCATCAGGCTTTCACGA 532
BSNT_04643___ 500 CAGAAGACTTGGCAAAGCACACAGAAATCTCTCAAGTATCCATACGAAAA 549
|.||||||.|.||.||.||.|||||||||||||||||.|||||..|||||
BPUM_2821 533 CCGAAGACCTAGCGAATCATACAGAAATCTCTCAAGTCTCCATTAGAAAA 582
BSNT_04643___ 550 TACTTAAAGTTTCTTGAAGATGTACAAGTTCTGAATGTAGAAATGGCGTA 599
|||||.||.||.|||||.||..|..||||..|..||||.||||||||.||
BPUM_2821 583 TACTTGAAATTCCTTGAGGACATCGAAGTAGTTGATGTTGAAATGGCATA 632
BSNT_04643___ 600 CGGAACGATCGGAAGACCTGTGTTTCAGTACAACGTCA--ACAACAGTAA 647
|||.||.||.|||.|.|||||.||.||.||.||..||| |||||| ||
BPUM_2821 633 CGGGACCATTGGACGTCCTGTTTTCCAATATAAACTCAGTACAACA--AA 680
BSNT_04643___ 648 CCTTAACGGAATAAAGCAATATCTATAA 675
..|.||...|||..||||||||||||||
BPUM_2821 681 TATGAATTTAATTCAGCAATATCTATAA 708
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