Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04641 and BPUM_2819
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:22
# Commandline: needle
# -asequence dna-align/BSNT_04641.1.24716.seq
# -bsequence dna-align/BPUM_2819.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04641-BPUM_2819.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04641-BPUM_2819.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04641
# 2: BPUM_2819
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 618
# Identity: 378/618 (61.2%)
# Similarity: 378/618 (61.2%)
# Gaps: 120/618 (19.4%)
# Score: 1122.0
#
#
#=======================================
BSNT_04641 1 ATGAAAAATACTTATTTGACAGGATATTTTCCGCTGATTGCGATCCTGCT 50
|||||||||||.||||||||.||||||||||||||||||.||||..|.||
BPUM_2819 1 ATGAAAAATACATATTTGACTGGATATTTTCCGCTGATTTCGATTTTACT 50
BSNT_04641 51 TTTTAGTTCGTCCTTATCCATCTCAACTTCACTTTATGCGTTGAAGA-TG 99
.||.||.||..|.||.||.|| .|||||..|| |.|.|.|.|| ||
BPUM_2819 51 ATTCAGCTCTGCTTTTTCGAT-----TTTCACAGTA-GGGATTACGACTG 94
BSNT_04641 100 CTGTCTTCA-------------TTTGGAATGTATGATGGAATGCTCGATT 136
.|.||||.| |||..||.|.||||||||||.|
BPUM_2819 95 ATTTCTTGAATCAAGCAGGTATTTTAAAAGGGATGATGGAATTC------ 138
BSNT_04641 137 ATTTTTCAGAGAAAGGAATCAGGCTTGCGTTATTTGCTGCCTTTGCACTT 186
||.||.||..|.||.|||||.|||||..|.||||||||.|||||||||
BPUM_2819 139 --TTCTCGGAACAGGGCATCAGACTTGCTCTTTTTGCTGCTTTTGCACTT 186
BSNT_04641 187 TTATATTTTATGGTTCTGTCCGCTCTGAAATTAATTGCAAATACCGTGAC 236
.|.|||||||||.||.|.||.||..|||||.|.||||||.||||.||...
BPUM_2819 187 GTTTATTTTATGATTTTATCTGCCTTGAAACTGATTGCAGATACGGTATT 236
BSNT_04641 237 CGAGCTGTCATTGCTGTTTTTTGCTAATGATCCGGAAGGGAACAACCTGA 286
.||||||.||.|.||.|||||.||.||.|||||.||||||.|.|||.|.|
BPUM_2819 237 AGAGCTGGCACTACTCTTTTTCGCGAAAGATCCTGAAGGGGAGAACTTAA 286
BSNT_04641 287 A-AAAACTCAGAATGGGTTCCATG---ATTTATTTG-------------- 318
| ||||.||.||.||..|.|..|| |||||||||
BPUM_2819 287 AGAAAATTCGGATTGCATCCGTTGTTTATTTATTTGCTGGCTTACTTGCA 336
BSNT_04641 319 ----------GGCGGCGG--GATT----TTATC---CTTTGTGCTCTT-G 348
.||.||.| |||| ||.|| ||.|.|| |||| |
BPUM_2819 337 TTTCTACTGACGCAGCAGCTGATTCTGCTTGTCGGACTATTTG-TCTTAG 385
BSNT_04641 349 CAAAATGTCATTTGGATTGTGATCTGGTTTGCGGTCGTCACGCTCGCTTA 398
| |.|||.|.|..||| |.||||||.|||.||| ||||
BPUM_2819 386 C---AGGTCTTGTCTATT-TTATCTGGGTTGTGGT--------TCGC--- 420
BSNT_04641 399 CTTTGTGTTTACCGTATACCGGATTTATTCGA-CGCTTTCTCTCATG-TC 446
||||| ||.| ||||||| |||| |.
BPUM_2819 421 ----------------------ATTTA-TCAATCGCTTTC---CATGCTG 444
BSNT_04641 447 A--TTAGTTGGATTCAT----TCTATTGGAACTGCTGTTTTGGTTTACCT 490
| |||.||||.||.|| |.|||| .|||||||||||...||.|
BPUM_2819 445 AATTTAATTGGTTTTATGATGTTTATT----TTGCTGTTTTGGGCCACGT 490
BSNT_04641 491 TTGTTATCGGTATTCTGTTCATATTTATCAAGCTTTATAATAGCATAATG 540
||.|.||.||.|||.|||.|.|||||||.|||||||||||.||..|.|||
BPUM_2819 491 TTTTAATTGGCATTTTGTACTTATTTATTAAGCTTTATAACAGTGTTATG 540
BSNT_04641 541 GCTAGCTTACCTGTGTAA 558
||.||..|.|||...|||
BPUM_2819 541 GCAAGTCTGCCTTCATAA 558
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