Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04636 and BPUM_2815

See Amino acid alignment / Visit BSNT_04636 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:21
# Commandline: needle
#    -asequence dna-align/BSNT_04636___kapD.1.24716.seq
#    -bsequence dna-align/BPUM_2815___kapD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04636___kapD-BPUM_2815___kapD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04636___kapD-BPUM_2815___kapD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04636___kapD
# 2: BPUM_2815___kapD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 681
# Identity:     429/681 (63.0%)
# Similarity:   429/681 (63.0%)
# Gaps:         123/681 (18.1%)
# Score: 1248.0
# 
#
#=======================================

BSNT_04636___      1 ---GTGACGACAAACA---------GCTTACTCATTATTGATTTCGAATT     38
                        |||     .||||         ||||    .|..|.|||||.|||||
BPUM_2815___k      1 ATGGTG-----GAACAGAAGACGGTGCTT----GTGGTCGATTTTGAATT     41

BSNT_04636___     39 TACAATGCCCGATGGAAAGTA-CAGCCCTCAAAACTTCTTCCCGGAAATC     87
                     |||.|||||.||||||||||| || .||.|||||.||.||.||.|||||.
BPUM_2815___k     42 TACGATGCCTGATGGAAAGTATCA-TCCGCAAAATTTTTTTCCTGAAATT     90

BSNT_04636___     88 ATTGAAGCCGGAATTGT-AAAGTCG---ATTG--ATGATGAAGTGGTTGA    131
                     ||||||||.|||.|.|| |||| ||   |.||  |.|||.|     |.||
BPUM_2815___k     91 ATTGAAGCTGGAGTAGTGAAAG-CGGCAAGTGAAACGATCA-----TAGA    134

BSNT_04636___    132 GACGTTTTCTAGCTATGTTAGACCGAAAAAGTTCCCGAAGCTTACGAAAC    181
                     .|||||.||||||||.||.|.|||.|||||||||||||||||.|||||.|
BPUM_2815___k    135 CACGTTCTCTAGCTACGTCAAACCAAAAAAGTTCCCGAAGCTGACGAAGC    184

BSNT_04636___    182 GCTGCAAATCATTTTTAAAAATAACCCAAAAACAGGTAGACGA-AGGAAT    230
                     |.||.|||||.|||.|....||.||.||..|..|.||||| || .|||||
BPUM_2815___k    185 GATGTAAATCGTTTCTCGGTATTACGCAGCAGGATGTAGA-GAGCGGAAT    233

BSNT_04636___    231 GAGATTC----GAGGATTTCATCCGTAAACT------------------A    258
                         |||    ||||..||.|||...||.||                  |
BPUM_2815___k    234 ----TTCCTTTGAGGCGTTTATCGAGAAGCTTGTGTCGCTTGATGGGGGA    279

BSNT_04636___    259 AACGAGCTGGATCCTGAGAAAAACAGCACAATTATTACGTGGGGAAACAT    308
                     .|.|| |||     ||||            ||||||||.|||||.||.||
BPUM_2815___k    280 GAGGA-CTG-----TGAG------------ATTATTACATGGGGCAATAT    311

BSNT_04636___    309 GGATATGAAAGTGCTGAAGCAAAACTGTATGTTTAACCATA-TCCCTTTC    357
                     |||.|||||||||||||||||||||||||||.|.||.|||| |..|||| 
BPUM_2815___k    312 GGACATGAAAGTGCTGAAGCAAAACTGTATGCTCAATCATATTGGCTTT-    360

BSNT_04636___    358 CCGTTTAAGGGAGAAATGAGAGA--TTTATCGC--TTGAATACAAAAACT    403
                     ||.||||||||..|..||||.||  ||    ||  |||||||.||.|.||
BPUM_2815___k    361 CCATTTAAGGGCAAGCTGAGGGACCTT----GCCTTTGAATATAAGACCT    406

BSNT_04636___    404 TTTTTGGAGACCGGACATTGACGGGTTTATGGAAAGCTGCCGAAGAGTAT    453
                     |||||||.||.||.|||.|||||||..|..|.||.||.||..|.||.||.
BPUM_2815___k    407 TTTTTGGTGATCGCACACTGACGGGGCTTCGCAAGGCGGCAAAGGAATAC    456

BSNT_04636___    454 GG-AGATTCC---GGAACCGGCACCCATCATAAAGCGCTTGATGATGCTC    499
                     || ||    |   |||.|.||.|..|||||||||||.|||||||||||..
BPUM_2815___k    457 GGCAG----CGAAGGAGCTGGTAAGCATCATAAAGCACTTGATGATGCCA    502

BSNT_04636___    500 TCACAGCATATAAACTTTTTAAGCTTGTTGAGCAGGATAAG-CAG----T    544
                     |.||..|.|||.|.||.||||..|||.||||     |.||| |||    |
BPUM_2815___k    503 TGACGACTTATCAGCTGTTTACCCTTTTTGA-----AAAAGACAGATCCT    547

BSNT_04636___    545 ATCTCGAAAAGCCAAAACCGCCCACAATCGGCGAAAGAATCGATTTAAC-    593
                     ||.|.|||||.||..||.|..|||.|||.||.||....||||||||  | 
BPUM_2815___k    548 ATGTGGAAAATCCGCAAACAACCAAAATTGGTGAGCTGATCGATTT--CT    595

BSNT_04636___    594 CGAAC--TGTTCAAGCGCGCGACGTGA----    618
                     |..||  |.||.|..|| ||    |||    
BPUM_2815___k    596 CTCACTTTTTTGATTCG-GC----TGATTAG    621


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