Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04636 and BPUM_2815
See
Amino acid alignment /
Visit
BSNT_04636 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:21
# Commandline: needle
# -asequence dna-align/BSNT_04636___kapD.1.24716.seq
# -bsequence dna-align/BPUM_2815___kapD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04636___kapD-BPUM_2815___kapD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04636___kapD-BPUM_2815___kapD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04636___kapD
# 2: BPUM_2815___kapD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 681
# Identity: 429/681 (63.0%)
# Similarity: 429/681 (63.0%)
# Gaps: 123/681 (18.1%)
# Score: 1248.0
#
#
#=======================================
BSNT_04636___ 1 ---GTGACGACAAACA---------GCTTACTCATTATTGATTTCGAATT 38
||| .|||| |||| .|..|.|||||.|||||
BPUM_2815___k 1 ATGGTG-----GAACAGAAGACGGTGCTT----GTGGTCGATTTTGAATT 41
BSNT_04636___ 39 TACAATGCCCGATGGAAAGTA-CAGCCCTCAAAACTTCTTCCCGGAAATC 87
|||.|||||.||||||||||| || .||.|||||.||.||.||.|||||.
BPUM_2815___k 42 TACGATGCCTGATGGAAAGTATCA-TCCGCAAAATTTTTTTCCTGAAATT 90
BSNT_04636___ 88 ATTGAAGCCGGAATTGT-AAAGTCG---ATTG--ATGATGAAGTGGTTGA 131
||||||||.|||.|.|| |||| || |.|| |.|||.| |.||
BPUM_2815___k 91 ATTGAAGCTGGAGTAGTGAAAG-CGGCAAGTGAAACGATCA-----TAGA 134
BSNT_04636___ 132 GACGTTTTCTAGCTATGTTAGACCGAAAAAGTTCCCGAAGCTTACGAAAC 181
.|||||.||||||||.||.|.|||.|||||||||||||||||.|||||.|
BPUM_2815___k 135 CACGTTCTCTAGCTACGTCAAACCAAAAAAGTTCCCGAAGCTGACGAAGC 184
BSNT_04636___ 182 GCTGCAAATCATTTTTAAAAATAACCCAAAAACAGGTAGACGA-AGGAAT 230
|.||.|||||.|||.|....||.||.||..|..|.||||| || .|||||
BPUM_2815___k 185 GATGTAAATCGTTTCTCGGTATTACGCAGCAGGATGTAGA-GAGCGGAAT 233
BSNT_04636___ 231 GAGATTC----GAGGATTTCATCCGTAAACT------------------A 258
||| ||||..||.|||...||.|| |
BPUM_2815___k 234 ----TTCCTTTGAGGCGTTTATCGAGAAGCTTGTGTCGCTTGATGGGGGA 279
BSNT_04636___ 259 AACGAGCTGGATCCTGAGAAAAACAGCACAATTATTACGTGGGGAAACAT 308
.|.|| ||| |||| ||||||||.|||||.||.||
BPUM_2815___k 280 GAGGA-CTG-----TGAG------------ATTATTACATGGGGCAATAT 311
BSNT_04636___ 309 GGATATGAAAGTGCTGAAGCAAAACTGTATGTTTAACCATA-TCCCTTTC 357
|||.|||||||||||||||||||||||||||.|.||.|||| |..||||
BPUM_2815___k 312 GGACATGAAAGTGCTGAAGCAAAACTGTATGCTCAATCATATTGGCTTT- 360
BSNT_04636___ 358 CCGTTTAAGGGAGAAATGAGAGA--TTTATCGC--TTGAATACAAAAACT 403
||.||||||||..|..||||.|| || || |||||||.||.|.||
BPUM_2815___k 361 CCATTTAAGGGCAAGCTGAGGGACCTT----GCCTTTGAATATAAGACCT 406
BSNT_04636___ 404 TTTTTGGAGACCGGACATTGACGGGTTTATGGAAAGCTGCCGAAGAGTAT 453
|||||||.||.||.|||.|||||||..|..|.||.||.||..|.||.||.
BPUM_2815___k 407 TTTTTGGTGATCGCACACTGACGGGGCTTCGCAAGGCGGCAAAGGAATAC 456
BSNT_04636___ 454 GG-AGATTCC---GGAACCGGCACCCATCATAAAGCGCTTGATGATGCTC 499
|| || | |||.|.||.|..|||||||||||.|||||||||||..
BPUM_2815___k 457 GGCAG----CGAAGGAGCTGGTAAGCATCATAAAGCACTTGATGATGCCA 502
BSNT_04636___ 500 TCACAGCATATAAACTTTTTAAGCTTGTTGAGCAGGATAAG-CAG----T 544
|.||..|.|||.|.||.||||..|||.|||| |.||| ||| |
BPUM_2815___k 503 TGACGACTTATCAGCTGTTTACCCTTTTTGA-----AAAAGACAGATCCT 547
BSNT_04636___ 545 ATCTCGAAAAGCCAAAACCGCCCACAATCGGCGAAAGAATCGATTTAAC- 593
||.|.|||||.||..||.|..|||.|||.||.||....|||||||| |
BPUM_2815___k 548 ATGTGGAAAATCCGCAAACAACCAAAATTGGTGAGCTGATCGATTT--CT 595
BSNT_04636___ 594 CGAAC--TGTTCAAGCGCGCGACGTGA---- 618
|..|| |.||.|..|| || |||
BPUM_2815___k 596 CTCACTTTTTTGATTCG-GC----TGATTAG 621
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.