Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04635 and BPUM_2814
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:21
# Commandline: needle
# -asequence dna-align/BSNT_04635___kapB.1.24716.seq
# -bsequence dna-align/BPUM_2814___kapB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04635___kapB-BPUM_2814___kapB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04635___kapB-BPUM_2814___kapB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04635___kapB
# 2: BPUM_2814___kapB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 440
# Identity: 269/440 (61.1%)
# Similarity: 269/440 (61.1%)
# Gaps: 100/440 (22.7%)
# Score: 846.0
#
#
#=======================================
BSNT_04635___ 1 ATGAGC--ACGT-----TTGAGACAGGCTCTATCGTTAAAGGATTTTACA 43
|||| | ||.| ||| ||||.| |.||.|||||||||||.|
BPUM_2814___k 1 ATGA-CAGACATTCAAATTG-GACAAG-----TTGTGAAAGGATTTTATA 43
BSNT_04635___ 44 AAACAGGTGTATACATAGGAGAAATCACGGCTTGCAGGCTGCAG------ 87
||||||||||.|||.|.||.|||.| |.|.||||
BPUM_2814___k 44 AAACAGGTGTTTACGTTGGGGAAGT-----------GACAGCAGTAAAAC 82
BSNT_04635___ 88 CAT-----TATTTAGTGAAAGTGAAAGCGGTTCTTACCCATCCCGCTCAG 132
||| |||.|.||..||||||||||.|||||.||.||||||.||||.
BPUM_2814___k 83 CATCGGCCTATCTCGTTCAAGTGAAAGCCGTTCTGACACATCCCACTCAA 132
BSNT_04635___ 133 GGAGACCTTCATCATCCAAAACAGGCGGATGTGCCATTTTTCCATGAGAG 182
||.|||||.|||||.||||||.|.||.||.|||||.||||||||.||.||
BPUM_2814___k 133 GGCGACCTGCATCACCCAAAAGAAGCAGACGTGCCTTTTTTCCAAGAAAG 182
BSNT_04635___ 183 AAAAGCGCTCGCATATGGTGAACAGACCAATATCCCCCACCATATGGTGA 232
|...||..|.||.|||.||||||||||.||||||||.||.||||||||||
BPUM_2814___k 183 ACGGGCTTTGGCCTATCGTGAACAGACGAATATCCCTCATCATATGGTGA 232
BSNT_04635___ 233 AGCCTTATGACGGTGAAGTGCCGGATTATACCGAATCTCTGCGGGAGGCG 282
||||||||||.||.||..|.||.||||||...|.|||.||....||
BPUM_2814___k 233 AGCCTTATGATGGCGATATACCAGATTATCAAGTATCACTAAAAGA---- 278
BSNT_04635___ 283 ACAGCACAGCTG-AGAGCCAAATTGA------------ATGAGGATGGTT 319
||||| ||| .|||||.| |||..||||.||
BPUM_2814___k 279 -------AGCTGTAGA--AAAATTAAAACAAGCGCTTCATGCAGATGATT 319
BSNT_04635___ 320 CGGAGTGGGCA--------AAGCGC-TCCCTTCATAATCTGGACAT-TTT 359
|..|.|||||| |||.|| |.||| |||| | |.|
BPUM_2814___k 320 CAAAATGGGCAGAAAAATCAAGGGCATGCCT-----ATCT-----TCTCT 359
BSNT_04635___ 360 AGAAAAAGAATATTTTAACCAGCCATAA------------ 387
.||||||||.|||||| |||.||
BPUM_2814___k 360 CGAAAAAGATTATTTT------CCAGAAGACGCCCGCTAA 393
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