Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04634 and BPUM_2812
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:21
# Commandline: needle
# -asequence dna-align/BSNT_04634___kinB.1.24716.seq
# -bsequence dna-align/BPUM_2812.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04634___kinB-BPUM_2812.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04634___kinB-BPUM_2812.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04634___kinB
# 2: BPUM_2812
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1463
# Identity: 836/1463 (57.1%)
# Similarity: 836/1463 (57.1%)
# Gaps: 346/1463 (23.7%)
# Score: 2099.5
#
#
#=======================================
BSNT_04634___ 1 ATGGAAATTCTAAAAGACTATCTTCTGCA--CATCTGCTTTATTTTGTTT 48
||||||||..|.||.||.|.|||.||.|| .|||| ||||||.|.|||
BPUM_2812 1 ATGGAAATGTTCAAGGATTTTCTGCTCCATGTATCT--TTTATTCTATTT 48
BSNT_04634___ 49 CCTATTCTTCTTTACCAAGTGTTTTGGCTTGGAAAA--------CCTGCG 90
||.|||.||.|.||.||.|...|.||||| || |||||
BPUM_2812 49 CCAATTTTTTTATATCATGCACTATGGCT-----AAGCCGGACCCCTGC- 92
BSNT_04634___ 91 ATTCTTGTGCCAAA----AATAAACAGCGGTTTGGTCACGCTCTTCGCCT 136
||.|.|.||||| |||||||.|| |.|||||..|.|||||.|
BPUM_2812 93 --TCATTTCCCAAAAACGAATAAACTGC----TCGTCACAGTATTCGCAT 136
BSNT_04634___ 137 GCGGCGCCTCCGTTTTATGCATTAT-TTTCC--------CGATTCATGAA 177
.|..|.|.||.|...||||.||||| |.||| |||||...||.
BPUM_2812 137 CCATCTCTTCAGCACTATGTATTATGTATCCAGTTGGTTCGATTTTAGAC 186
BSNT_04634___ 178 ATG--GACTACATACAATACGGCCTTCAGATGATTCCCGTTATCATTTGT 225
.|| |||| |||||||| ||...|||| || ||||
BPUM_2812 187 TTGCAGACT-----------GGCCTTCA-ATCTATCCC----TC--TTGT 218
BSNT_04634___ 226 --TT---ATTTTACATTAGTACCGCTTCCGGA-CTTACA--------GTC 261
|| |||||| |.|||| .||||| .||
BPUM_2812 219 ACTTGCCATTTTA-------------TACGGAGGTTACACAGCTGGGATC 255
BSNT_04634___ 262 GCCGC-ATCT------GTCCTATG-------TTTTGAACTG-------CT 290
|..|| |||| ||.|.||| |..||| || ||
BPUM_2812 256 GTTGCTATCTTGATAAGTTCCATGGTCAAATTCGTGA--TGTATGGCTCT 303
BSNT_04634___ 291 TTTTTACGAACCTTCCGCAATGTTTGTTTTCACTTTGCTGCC--TTTTCT 338
||||||.| |.|||...|||.|.|..|.|| |||.||
BPUM_2812 304 TTTTTATG-------------GGTTGGACTCATTGTCGTACCAATTTACT 340
BSNT_04634___ 339 TATCATTATCCCAATCTTATTTCAGAAAAAATGGC--CATTCATGTCCAA 386
|.| |.||||||.|..|.|||.|....||||||| || ||.|.|.|
BPUM_2812 341 TTT--TCATCCCATTTCTGTTTTACCGGAAATGGCGTCA---ATATTCGA 385
BSNT_04634___ 387 AGC-GAAAAAACTGCTGCTGTCTTTATTGATCAGCTGCGTGGAGATTTTC 435
||| |||||| ||||.||| .||||| |.|
BPUM_2812 386 AGCTGAAAAA---GCTGATGT-----------------ATGGAG---TGC 412
BSNT_04634___ 436 CTA----TTTTTCGCCTCAAGCTGGATTC--TATCCGCCTT-GAATATTT 478
.|| |||.|| ||| .|||||| |||...|.|| ||.|||||
BPUM_2812 413 TTATCGGTTTATC----CAA--AGGATTCTTTATTTACATTGGACTATTT 456
BSNT_04634___ 479 ----TAAATTTTCAAAAATCAGGAAT------TTTCGTTTACGAGGCGGC 518
|.|..|| ||| ||||| ...|.||||..|.||.||
BPUM_2812 457 GCGGTCAGCTT-----AAT--GGAATACAGCCCGGCCTTTATCATGCAGC 499
BSNT_04634___ 519 AG-------------------TCTCAGGGCTTTTCCGCTCCAGTGTTCTT 549
|| |||||...|||| .||.|| |.|||||
BPUM_2812 500 AGAAGTTACTTGAGTTGTTTTTCTCAACTCTTT---ACTACA-TATTCTT 545
BSNT_04634___ 550 CTAT-----TAAGCATCTATATTATCGAAAGCATCGCCGAAAATATCGCC 594
|.| ||||.||||||...||.|||..|.||...|||||| ||.
BPUM_2812 546 -TCTCGTGCTAAGTATCTATTCCATTGAATTCGTCAAAGAAAAT---GCG 591
BSNT_04634___ 595 C---TGCGCTCACAGCTTATCCATTCTGAAAAAATGACGATTGTGAGTGA 641
| ||.|..|||||||..||||.||.|||||..||||.|||||.|||||
BPUM_2812 592 CAAATGAGAACACAGCTCGTCCAATCAGAAAAGCTGACCATTGTAAGTGA 641
BSNT_04634___ 642 ACTGGCAGCGAGCGTCGCCCATGAGGTCAGGAATCCGCTGACAGTTGTCC 691
|||.||.||.|||||.||||||||.||..|.|||||.||||||||.||..
BPUM_2812 642 ACTCGCTGCAAGCGTTGCCCATGAAGTACGCAATCCACTGACAGTGGTGA 691
BSNT_04634___ 692 GCGGGTTTGTCCA---GCTGCTTTT-TAATGACGAAACCCTACAAAACAA 737
|.||.|||.|.|| ||| ||||| ||.||| ||| ||||||| .|
BPUM_2812 692 GAGGCTTTATTCAATTGCT-CTTTTCTAGTGA--AAA---TACAAAA-GA 734
BSNT_04634___ 738 GTCGAGTGC------GGATTACAAAAAGCTTGTACTGTCAGAGCTTGACC 781
|.||..||| .|||||.|||||.||.||..||||||||.|.|||.
BPUM_2812 735 GCCGGCTGCCAATAAAGATTATAAAAATCTCGTTTTGTCAGAGTTAGACA 784
BSNT_04634___ 782 GGGCGCAAGGCATTATTACAAACTATCTCGATATGGCCAAACAGCAATTA 831
|.|||||.|..||||||||.|..|||||.||.||.||.||||| .|||||
BPUM_2812 785 GAGCGCAGGATATTATTACGAGTTATCTTGACATTGCGAAACA-AAATTA 833
BSNT_04634___ 832 -TACGAAAAAGAGGTTTTTG-ACCTATCAGCCCTTATCAAA-------GA 872
||..||| ||| |.||.|||.|| ||||.|| ||
BPUM_2812 834 TTATCAAA---------TTGAATCTCTCAACC--TATCTAAATTACTCGA 872
BSNT_04634___ 873 GACAA---GC-TCCCTTATGGTGTCGTACGCCAATTACAAGTCAGTAAC- 917
| .|| || ||.||.|||...||.||.||.||||.|||.||.||.||
BPUM_2812 873 G-GAATGTGCATCACTGATGACATCCTATGCGAATTTCAAATCGGTCACG 921
BSNT_04634___ 918 ---CGTCGAGGC--TGAAACAGAACCGGAACTTTTGATATAC------GG 956
|.||.|..| ||||.||| ||| ||||| ||
BPUM_2812 922 ATTCATCAATCCATTGAACCAG-------ACT-----TATACATTCAAGG 959
BSNT_04634___ 957 AGACGCAACAAAGCTGAAGCAGGCTGTCATCAACCTGATGAAAAACAGTA 1006
.||.|.|||.|||.|.||.||.|...|.||.||..|.||.|||||....|
BPUM_2812 960 TGATGAAACGAAGATCAAACAAGTCATGATTAATTTAATCAAAAATGCGA 1009
BSNT_04634___ 1007 TTGAAGCAGTTCCTC---ACGGGAAGGGGA---TGATCCACATATCAGC- 1049
||||||||| ||.| ||..||||||.| |||.| |.|..||
BPUM_2812 1010 TTGAAGCAG--CCCCAGAACACGAAGGGAAAATTGAAC----TTTTTGCT 1053
BSNT_04634___ 1050 -CAAAAGAAACGGCCATACGATCATGATTAACATCACA-----------G 1087
||||||||| |||||.| ||.|| .|| |
BPUM_2812 1054 TCAAAAGAAA----------ATCATAA--AATAT-GCATTTATTTTGTGG 1090
BSNT_04634___ 1088 ACAATGGGGTCGGGATGACAGACCATCAAATGCAAAAACTCGGCGAACCT 1137
|.||.||.||.||.||||||||....||||||.||||.||.||||||||.
BPUM_2812 1091 ATAACGGTGTAGGAATGACAGAAAGCCAAATGAAAAAGCTTGGCGAACCC 1140
BSNT_04634___ 1138 TATTATTCCTTAAAAACGAACGGAACGGGACTCGGCCTCACCGTAACCTT 1187
|||||..|||||||||..||.||.||.|||||.||.||.|||||.||.||
BPUM_2812 1141 TATTACACCTTAAAAAATAAAGGGACAGGACTTGGACTGACCGTGACATT 1190
BSNT_04634___ 1188 TTCCATTATTGAACATCATCACGGGACCATTTCATTTAACAGCAGCT--- 1234
|||.||.||||||.|||||||.||||||| |||.||| ||..||||
BPUM_2812 1191 TTCTATCATTGAAAATCATCATGGGACCA-TTCGTTT--CAAAAGCTCGC 1237
BSNT_04634___ 1235 TCCAAAAAGGCACTACGGTGACCATTAAGCTTCCCGCTGATCTTCCTCAC 1284
|.||....||.||.||.||.|||.|.|||.||||.|..||| ||
BPUM_2812 1238 TGCAGTCTGGTACAACCGTTACCGTGAAGTTTCCTGAAGAT-------AC 1280
BSNT_04634___ 1285 TAG---------- 1287
.||
BPUM_2812 1281 AAGAAGAAAATGA 1293
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