Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04633 and BPUM_2811
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:21
# Commandline: needle
# -asequence dna-align/BSNT_04633___patB.1.24716.seq
# -bsequence dna-align/BPUM_2811.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04633___patB-BPUM_2811.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04633___patB-BPUM_2811.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04633___patB
# 2: BPUM_2811
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1271
# Identity: 775/1271 (61.0%)
# Similarity: 775/1271 (61.0%)
# Gaps: 202/1271 (15.9%)
# Score: 1944.0
#
#
#=======================================
BSNT_04633___ 1 ATGAACTTTGATAAACGAGAAGA-ACGCCTTGGCACCCAATCGGTCAAAT 49
|||||.||.||..||| |||..| |||....||..|..||||.||.||||
BPUM_2811 1 ATGAATTTCGACGAAC-AGATCATACGTAAAGGTTCAAAATCAGTGAAAT 49
BSNT_04633___ 50 GGGACAAAACAGGCGAA----TTATTTGGCGT---GACAGACGCACTCCC 92
||||..||.||| | ||||| |.| .|||||.||.||.||
BPUM_2811 50 GGGATCAAGCAG----AGTCTTTATT---CCTTACAACAGATGCGCTGCC 92
BSNT_04633___ 93 GATGTGGGTGGCGGATATGGATTTTCGCGCGCCAGAAGCA----ATAACT 138
.||||||||.||.||||||||||||...||||| ||| .|...|
BPUM_2811 93 AATGTGGGTAGCAGATATGGATTTTAAAGCGCC----GCAGGTCGTCCTT 138
BSNT_04633___ 139 GAAGCGTTAAAAGAGCGTCTTGACCACGGTATTTTTGGTTATACAACTCC 188
||.||.||||||.||||..|.||.||||||.|.|||||.|||.|...||.
BPUM_2811 139 GATGCATTAAAAAAGCGATTGGATCACGGTGTATTTGGCTATGCTTTTCA 188
BSNT_04633___ 189 AGATCAAAAAACGAGGGATGCTGTGTGC-GGATGGATGCAAAA-CAGGCA 236
||||||..|.|||..|.|.||.|| .|| |.||||.| ||||| .|||||
BPUM_2811 189 AGATCAGGATACGCAGCAGGCAGT-AGCTGAATGGCT-CAAAAGAAGGCA 236
BSNT_04633___ 237 CGGCTGGAAGGTGAATCCGGAAAG----CATCACATTCAGCCCCGGCGTT 282
| |||.|||..||||.||.|| |.||||.||||..||.||..||
BPUM_2811 237 C----GGATGGTCGATCCAGACAGAAGCCGTCACCTTCACACCTGGGATT 282
BSNT_04633___ 283 GTAACGGC-CTTGAGCATGGCGGTACAAGCTTTTACGGAGCCGGGCGATC 331
||.||.|| ||| ||..|.||.||.|||||.|.|||.||.||..|.||..
BPUM_2811 283 GTCACTGCACTT-AGTTTTGCAGTCCAAGCCTATACAGAACCAAGTGACG 331
BSNT_04633___ 332 AAGTAGTTGTTCAGCCTCCAGTTTATACGCCTTTTTACCATATGGTGGA- 380
||||.||..|.|||.|.||.||.|||||.||||||||.||.|||.|.||
BPUM_2811 332 AAGTCGTCATACAGTCCCCTGTGTATACACCTTTTTATCAAATGATTGAA 381
BSNT_04633___ 381 -GAAA--AACGGCCGG-------CACAT--TTTACATAATCCGCTGCTAG 418
|||| ||||..|.| || || ||||.|.| |||
BPUM_2811 382 CGAAATGAACGAACAGTCTCAACCA-ATCCTTTAAAAA---------TAG 421
BSNT_04633___ 419 AAGAAGACGGCGCATATGCAATGGATTTTGAAGATTTGGAGACGAAGCTT 468
||.|..||.|| ||||..|||||||||||.|||||.||||..||..|.
BPUM_2811 422 AAAACAACCGC---TATGTGATGGATTTTGATGATTTAGAGAAAAAATTA 468
BSNT_04633___ 469 AG-TGACC-CAAGCG----TTACATTGTTTATTTTATGCAATCCTCATAA 512
|| .|||| .||||| |.| ||| |..|.||..||||.|||||
BPUM_2811 469 AGCAGACCAGAAGCGAAGCTCA---TGT---TCCTCTGTCATCCGCATAA 512
BSNT_04633___ 513 CCCTTCTGGGCGTTCATGGGGCCGGGAAGATTTACTGAAGC---TAGGCG 559
.||.||.||..|..|||||......|||||.||| |||| ||||..
BPUM_2811 513 TCCGTCCGGAAGAGCATGGTCTAAAGAAGAATTA---AAGCGAGTAGGAA 559
BSNT_04633___ 560 AATTGTGCCTTGAGCATGGCGTAACAGTTGTATCGGATGAAATCCATTCC 609
|..|.||..|..||||.||.||.|||||.||.||.|||||.||.|||||.
BPUM_2811 560 ACCTCTGTATCAAGCACGGTGTTACAGTCGTTTCAGATGAGATTCATTCT 609
BSNT_04633___ 610 GATTTAATGCTGTACGGACACAAA----CACACGCCGTTCGCTTCGCTCT 655
|||||||||||.||||| ||| ||...|||.||.|||...||.|
BPUM_2811 610 GATTTAATGCTATACGG----AAAGCCGCATGTGCCATTTGCTAGTCTTT 655
BSNT_04633___ 656 CTGACGATTTCGCTGATATTTCTGTGACATGTGCTGCTCCAAGCAAAACA 705
||||.||..|.||..||||..|.||||||||...|||.|||||.||||||
BPUM_2811 656 CTGATGACATAGCACATATCACAGTGACATGCATTGCACCAAGTAAAACA 705
BSNT_04633___ 706 TTTAATATCGCCGGATTGCAGGCTTCAGCGATCATTATTCCGGATCGCCT 755
||||||.|.||.||..|.||.||.|||||.||.||||||.|.|| |
BPUM_2811 706 TTTAATTTAGCTGGCCTCCAAGCATCAGCCATTATTATTTCCGA-----T 750
BSNT_04633___ 756 GAAGCGCGCC----AAGTTTTCCGCAAGCCTT---------------CAG 786
|||| ||| ||.|||| ||.
BPUM_2811 751 GAAG------AAAAAAG--------AACCCTTTTTAACAATGAAATGCAA 786
BSNT_04633___ 787 CGCAATGGTTTAGGCGGAA-TGAACGCGTTTGCCGTCACTGCAATCGAAG 835
.|.||.||..| |||..|| ||||.||.|||||..|..||||.||.||||
BPUM_2811 787 AGAAACGGACT-GGCTAAACTGAATGCATTTGCGATTCCTGCGATGGAAG 835
BSNT_04633___ 836 CCGCGTA--TTCAAAAGGCGGACCGTGGCTTGATG-AATTGATCACTTAC 882
|.||.|| ..||...||..|| ||||||.|||| |.|||.|| .|||.
BPUM_2811 836 CAGCATACCGCCATGGGGATGA--GTGGCTGGATGCACTTGTTC-TTTAT 882
BSNT_04633___ 883 ATTGAGAAAAACATGAACGAAGCGGAA--GCCT-TTTTGA-GCACCGAGC 928
.|.||.||.||.||||| ||..|.|| |.|| |.|||| |.|| |.|
BPUM_2811 883 CTCGAAAACAATATGAA--AATGGCAATGGACTATATTGATGAAC--ATC 928
BSNT_04633___ 929 TGCCAAAGGTCAAAATG------ATGAAGCCGGATGCATCATACTTGATT 972
|.||| ||.||| |||||.||.|||||.||.|| ||.|||
BPUM_2811 929 TTCCA------AACATGCGTTATATGAAACCAGATGCTTCTTA-TTTATT 971
BSNT_04633___ 973 -TGGCTCGAC-TTCAGCGCTTACGGCTTGTCCGATACAGAGCTCCAGC-- 1018
|||.|.||| ||| |.|.||| .|.||.||| ||.|||
BPUM_2811 972 ATGGATGGACATTC-GGGATTA--------TCAATTCAG---TCAAGCGG 1009
BSNT_04633___ 1019 ------AAAGAA---TGCTAAAAAAAGGAAAAGTTATTTTAGAGCCCGG- 1058
||.|.| ||||.|||||.||.|||||.||..||||||..||
BPUM_2811 1010 AATTGAAACGCAATTTGCTCAAAAAGGGCAAAGTGATCCTAGAGCTTGGT 1059
BSNT_04633___ 1059 GACGAAATACGGGCCTGGCGGAGAAGGATTTATGCGCCTGAA-CGCGGGA 1107
.||| ..||.||.|..|..|||||.||.|||||.||..|||| |.| ||.
BPUM_2811 1060 CACG-TGTATGGACTCGAGGGAGATGGCTTTATTCGGATGAATCTC-GGC 1107
BSNT_04633___ 1108 TGCTCT-CTTGCAACCCTGCAGGACGGCCTG---CGCC-GCATCAAAGC- 1151
|||.|| ||| ||||..|..|.||.||..|| |||| .|||| ||||
BPUM_2811 1108 TGCCCTGCTT-CAACAGTCAAAGAAGGATTGAAACGCCTTCATC-AAGCG 1155
BSNT_04633___ 1152 ----CG-CATTATCGTAA--- 1164
|| |||.|||..||
BPUM_2811 1156 TTTACGCCATCATCTGAATAA 1176
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