Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04631 and BPUM_2810

See Amino acid alignment / Visit BSNT_04631 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:21
# Commandline: needle
#    -asequence dna-align/BSNT_04631___yugE.1.24716.seq
#    -bsequence dna-align/BPUM_2810___yugE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04631___yugE-BPUM_2810___yugE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04631___yugE-BPUM_2810___yugE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04631___yugE
# 2: BPUM_2810___yugE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 290
# Identity:     184/290 (63.4%)
# Similarity:   184/290 (63.4%)
# Gaps:          58/290 (20.0%)
# Score: 537.5
# 
#
#=======================================

BSNT_04631___      1 ATGGAAGAAAGTCAAGCGGTCAG-GGAAATGATTAAGATCATTGCCAA--     47
                     |||.||||.||||||||.|| || .||.||||||.|..|.|||   ||  
BPUM_2810___y      1 ATGAAAGATAGTCAAGCTGT-AGAAGAGATGATTCAACTTATT---AAGG     46

BSNT_04631___     48 -ATGGGACCCGTTTAAATATGGAGAAGAGTTTTACGAAACGGAGGCTGTT     96
                      |||||||||.|||.|||||||.||.||.|||||.|||||||||.|||.|
BPUM_2810___y     47 CATGGGACCCTTTTCAATATGGGGAGGACTTTTATGAAACGGAGCCTGCT     96

BSNT_04631___     97 GATGTCGTGCAG-GCAGTCTATGATGAAGACGATCCCGACGT--------    137
                     ||.|||.| ||| |||.|.||.||.|.|||.||.||     |        
BPUM_2810___y     97 GACGTCAT-CAGTGCATTATACGACGCAGAAGACCC-----TTTATCTTT    140

BSNT_04631___    138 -GCTGGCGAAAAG-CATTC-AGCAAATATTTGAA-----ACTTCTTTTGA    179
                      ||     ||||| ||||| |||   .||||  |     || ||.|||||
BPUM_2810___y    141 AGC-----AAAAGACATTCAAGC---CATTT--ATCATCAC-TCATTTGA    179

BSNT_04631___    180 ACAAACGCTGCCGATCGACAGCTGCC--------GGGAAGTGGCTGGCCA    221
                     .||....|||||..||||.|||||.|        |.|||        .||
BPUM_2810___y    180 GCAGCTCCTGCCACTCGAGAGCTGTCAACATATAGCGAA--------TCA    221

BSNT_04631___    222 GCTTTTATTCATTAAAAACAGCAGCTCCTGCACGCCTTAA    261
                     ||||||..||||...|.||||||||||||||||.|..|||
BPUM_2810___y    222 GCTTTTCGTCATACGAGACAGCAGCTCCTGCACACGCTAA    261


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