Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04626 and BPUM_2807
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:21
# Commandline: needle
# -asequence dna-align/BSNT_04626___alaT.1.24716.seq
# -bsequence dna-align/BPUM_2807.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04626___alaT-BPUM_2807.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04626___alaT-BPUM_2807.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04626___alaT
# 2: BPUM_2807
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1230
# Identity: 855/1230 (69.5%)
# Similarity: 855/1230 (69.5%)
# Gaps: 105/1230 ( 8.5%)
# Score: 2773.0
#
#
#=======================================
BSNT_04626___ 1 ATG---ACTTCGTATTTATCAGACTATGTACAACAAATAAAACCATCCGG 47
||| |..||.||||||||.||....||||||...||..|.||.||.||
BPUM_2807 1 ATGAAAAAGTCTTATTTATCTGAAACGGTACAAAGCATTCAGCCGTCAGG 50
BSNT_04626___ 48 CATCCGCAAATTCTTTGATTTGGCGGCAACGATGGAAGGCGTCATTTCTT 97
.||.||.|||||||||||||||||.||.||.||||||||.||.|||||..
BPUM_2807 51 TATTCGGAAATTCTTTGATTTGGCAGCCACAATGGAAGGGGTTATTTCCC 100
BSNT_04626___ 98 TAGGCGTCGGCGAGCCTGATTTTGTTACCGCGTGGAATGTCCGCGAAGCA 147
|.||.|||||||||||.|||||.||.||.||.|||||||||.|.|||||.
BPUM_2807 101 TTGGTGTCGGCGAGCCAGATTTCGTGACAGCTTGGAATGTCAGAGAAGCC 150
BSNT_04626___ 148 AGCATTCTCTCTCTTGAACAAGGATATACGTCATACACGGCCAATGCGGG 197
||.|||.|.||..|.|||||||||..|||.||.||.|||||.||.||.||
BPUM_2807 151 AGTATTATGTCATTAGAACAAGGACTTACCTCTTATACGGCGAACGCAGG 200
BSNT_04626___ 198 TTTATACTCATTGCGGGAGGAAATCAGCCG-----TTATTTGAGCAACAG 242
.||.|..||.|||||..|.|||.|.|| || ||||.|.||| |
BPUM_2807 201 CTTGTTATCTTTGCGAAAAGAATTGAG-CGACTATTTATATAAGC----G 245
BSNT_04626___ 243 GTTTGATCTTAGCTACTCGCCAGATAATGAGCTGATTGTGACAGTGGGTG 292
||||.|..||...|||...||.||..|.||.||||||.|.|||||.||.|
BPUM_2807 246 GTTTCACATTGATTACAGTCCTGAAGAAGAACTGATTATCACAGTTGGCG 295
BSNT_04626___ 293 CAAGTCAGGCTTTGGATATTGCGATCCGCGCCATTGTGAATCCA--GGTG 340
.|||||||||..|.|||.|.||..|.||.||.|||.|.|| || ||.|
BPUM_2807 296 GAAGTCAGGCACTTGATTTGGCATTTCGTGCGATTTTAAA--CAGCGGCG 343
BSNT_04626___ 341 AGGAAGTCATCATTCCTGAGCCGTGTTTTGTGGCGTACGATGCGCTT--G 388
|.|||||.||||||||.|||||.|||||.||.||.||.|..||.||| |
BPUM_2807 344 ATGAAGTGATCATTCCAGAGCCTTGTTTCGTAGCATATGGGGCCCTTACG 393
BSNT_04626___ 389 TTTCTTTGGCAGGCGGTATCCCGGTTCACGTTCA--TACAACGGCAGACA 436
...||| ||||||||..|.||.||..| ||.| |||..||||.|| |
BPUM_2807 394 ACACTT--GCAGGCGGAGTTCCTGTCTA--TTTAAGTACCTCGGCTGA-A 438
BSNT_04626___ 437 AAGGATTT-AAAGCA-ACGGCTGCTGATTTTGAAGCG---GCAGTCACTG 481
||.||||| |||||| || .||||.|||.|| || |.||| ||
BPUM_2807 439 AAAGATTTCAAAGCAGAC-TCTGCGGATCTT----CGCACGAAGT---TG 480
BSNT_04626___ 482 A----AAAAACAAAGGCCATTCTCATCTGCTCACCATCGAATCCGACAGG 527
| .||.|||||.||.||.||..|.||.||||||||.|||||.||.||
BPUM_2807 481 ACGCCGAAGACAAAAGCAATCCTGCTTTGTTCACCATCAAATCCAACTGG 530
BSNT_04626___ 528 TTCGGTTTATTCGAAGGAAGAGC-TGAATGAGATTGCTGAGTTTGCCAAA 576
.||.||||||||.|||||||||| |||| ||.||||||.|.|||||.|||
BPUM_2807 531 CTCTGTTTATTCAAAGGAAGAGCTTGAA-GATATTGCTCAATTTGCAAAA 579
BSNT_04626___ 577 AAACATGATGTCATCGTCTTAGCCGACGAGATCTACGCGGAGCTGACATA 626
.|.|||||..|..||||..|..|.||.|||||.|||||.|||||||||||
BPUM_2807 580 GAGCATGACCTTCTCGTTATCACAGATGAGATTTACGCAGAGCTGACATA 629
BSNT_04626___ 627 TGATGAGGAATTTACAAGTATAGCGG-CATTACCGGGA-ATGAAGGAACG 674
.|||||.|..||||||||..|.|||| |||| |..|| |||||.|||.|
BPUM_2807 630 CGATGAAGCTTTTACAAGCGTTGCGGCCATT--CAAGATATGAAAGAAAG 677
BSNT_04626___ 675 GACGGTAGTCATCTCAGGCTTTTCAAAAGCATTTGCAATGACGGGCTGGA 724
.|||.|..|.||.||||||||||||||||..|||||.|||||.||||||.
BPUM_2807 678 AACGATCCTGATTTCAGGCTTTTCAAAAGGGTTTGCTATGACAGGCTGGC 727
BSNT_04626___ 725 GGCTCGGTTTTGCTGCGGCACCATCCT-TGCTTCGGGATGCCATGCTTAA 773
|..|.||.|.||..||.|||||| ||| |.||.||.|||||||||||.||
BPUM_2807 728 GCTTAGGATATGTGGCAGCACCA-CCTGTACTACGCGATGCCATGCTGAA 776
BSNT_04626___ 774 AATTCATCAGTATGCGATGATGTGCGCGCCCGCAATGGCGCAGTTTGCCG 823
|||.||.||.|||.|.||||||||||||||.||.|||||.||.|.|||.|
BPUM_2807 777 AATACACCAATATTCTATGATGTGCGCGCCTGCTATGGCACAATATGCAG 826
BSNT_04626___ 824 CCCTTGAAG--GCCTGAAGAA--CGGCATGGAAGACGTAGAAAAAATGAA 869
| .|||| ||.|.||.|| .||| |.|||||.||||||||||||||
BPUM_2807 827 C---AGAAGAAGCGTTAAAAAATGGGC-TAGAAGATGTAGAAAAAATGAA 872
BSNT_04626___ 870 AAAAAGCTATCGAAGAAGACGGAATCTGTTTGTAGAATCGCTC----AAT 915
.||||||||..|||||.|.||||||.|||||||.| |||| |||
BPUM_2807 873 GAAAAGCTACAGAAGACGTCGGAATTTGTTTGTCG----GCTCTTTGAAT 918
BSNT_04626___ 916 GAAATCGGTCTCAGC-TGTCATCATCCGGGCGGCGCTTTCTATGCTTTTC 964
|||.|.||.||| || |||||.||.||...||||||.||.||.|||||.|
BPUM_2807 919 GAACTGGGGCTC-GCATGTCACCAGCCAAACGGCGCATTTTACGCTTTCC 967
BSNT_04626___ 965 CATCTATTAAAAGCACGGGAATGAGTTCAGAACAGTTTGCCGAGGAGCTT 1014
|.||.||||||||||||||.||||..||||||||.|||||.||||||||.
BPUM_2807 968 CGTCCATTAAAAGCACGGGCATGACGTCAGAACAATTTGCTGAGGAGCTG 1017
BSNT_04626___ 1015 CTGACGCAG-GAAAAAGTGGCCGTTGTTCCTGGAAGTGTGTTTGGTCCGA 1063
|| .|..|| ||||||||.||||||||.|||||.|.|||.||.||.||||
BPUM_2807 1018 CT-CCTAAGTGAAAAAGTAGCCGTTGTCCCTGGTAATGTCTTCGGACCGA 1066
BSNT_04626___ 1064 GCGGTGAGGGTTATATCCGTTGTTCATACGCAACCTCGATTGAACAGCTT 1113
|.|||||.|||.||||.||||||||.||.||..|.||..|.||.||.|||
BPUM_2807 1067 GTGGTGAAGGTCATATTCGTTGTTCTTATGCTTCGTCTCTAGACCATCTT 1116
BSNT_04626___ 1114 CAAGAA-GCGTTAGTC-AGAATGAAACGCTTCCTGCACAAA--ACAA--- 1156
||.||| .|.|| || |||||..|.|||||..||||..|| ||||
BPUM_2807 1117 CAGGAATCCCTT--TCAAGAATTCAGCGCTTTTTGCAAGAACGACAAGTG 1164
BSNT_04626___ 1157 ----CATAA--------------------- 1161
||.||
BPUM_2807 1165 AAAGCAGAAGCACCTGTCATTATTAAATAA 1194
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