Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04619 and BPUM_2802
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:20
# Commandline: needle
# -asequence dna-align/BSNT_04619___pgi.1.24716.seq
# -bsequence dna-align/BPUM_2802___pgi.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04619___pgi-BPUM_2802___pgi.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04619___pgi-BPUM_2802___pgi.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04619___pgi
# 2: BPUM_2802___pgi
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1367
# Identity: 1070/1367 (78.3%)
# Similarity: 1070/1367 (78.3%)
# Gaps: 25/1367 ( 1.8%)
# Score: 4135.5
#
#
#=======================================
BSNT_04619___ 1 ATGACGCATGTACGCTTTGACTACTCAAAAGCGTTGACTTTC-TTCAACG 49
|||||.|||.|.|..||||||||||||||||||||..||||| ||||| |
BPUM_2802___p 1 ATGACACATATTCAATTTGACTACTCAAAAGCGTTACCTTTCTTTCAA-G 49
BSNT_04619___ 50 AACATGAACTTACATATCTGCGGGACTTTGTAAAAACAGCACACCATAAT 99
|.|||||.|||||||||.|....||.|||||.||....||.||.||||||
BPUM_2802___p 50 AGCATGAGCTTACATATTTAAAAGATTTTGTGAAGGTGGCCCATCATAAT 99
BSNT_04619___ 100 ATCCATGAAAAAACAGGCGCGGGCAGCGATTTTCTAGGCTGGGTGGACCT 149
||.||||||.||||.||..|.|||||.||||.|.||||||||||||||.|
BPUM_2802___p 100 ATTCATGAACAAACGGGTACAGGCAGTGATTATTTAGGCTGGGTGGACTT 149
BSNT_04619___ 150 CCCTGAA-CATTATGATAAAGAAGAATTCGCGCGCATCAAAAAAAGCGCG 198
.|| ||| ||.||||||...||||||||.||.|||||.||||||||.||.
BPUM_2802___p 150 ACC-GAAGCAATATGATCGCGAAGAATTTGCCCGCATTAAAAAAAGTGCA 198
BSNT_04619___ 199 GAAAAAATCAAATCTGACTCTGATGTCTTGCTTGTTGTCGGCATTGGCGG 248
||.|||||.|||||.||||||||||||||||||||||||||.||.|||||
BPUM_2802___p 199 GATAAAATTAAATCAGACTCTGATGTCTTGCTTGTTGTCGGAATCGGCGG 248
BSNT_04619___ 249 TTCTTATCTAGGAGCGCGGGCAGCGATTGAAGCGCTGAATCACGCGTTTT 298
|||.|||||.||.||.||.||.|||||||||....||||.|||.|.||.|
BPUM_2802___p 249 TTCATATCTCGGCGCACGTGCGGCGATTGAATTTTTGAACCACTCTTTCT 298
BSNT_04619___ 299 ATAACACTTTGCCAAAAGCAAAACGCGGCAATCCGCAAGTCATTTTTATC 348
|||||||..|||||||||..||||||...|.|||||||.||||.|||||.
BPUM_2802___p 299 ATAACACGCTGCCAAAAGGCAAACGCAAGACTCCGCAAATCATCTTTATT 348
BSNT_04619___ 349 GGAAACAACATCAGTTCATCTTATATGAGAGACGTCATGGATCTTCTTGA 398
|||||||||||||||||.||||||.|.|.|||.||.||||||||..|.||
BPUM_2802___p 349 GGAAACAACATCAGTTCTTCTTATTTAACAGATGTGATGGATCTATTAGA 398
BSNT_04619___ 399 AGATGTTGACTTCTCTATTAATGTGATTTCTAAATCAGGTACGACAACTG 448
|||||..||.|||||||||||.||.|||||.|||||.|||||.|||||.|
BPUM_2802___p 399 AGATGCAGATTTCTCTATTAACGTCATTTCAAAATCTGGTACAACAACAG 448
BSNT_04619___ 449 AACCTGCAATCGCTTTCCGTATTTTCCGCAAGCTTCTTGAAGAGAAATAC 498
|.||.||.||.||.||||||||.||....|||||.|||...||.||||||
BPUM_2802___p 449 AGCCAGCGATTGCGTTCCGTATCTTTAAAAAGCTCCTTATTGAAAAATAC 498
BSNT_04619___ 499 GGTAAAGAAGAAGCGAAAGCGCGGATTTATGCAACAACTGATAAAGAGCG 548
|||...||||||||||||...||.|||||||||||||||||.||||..||
BPUM_2802___p 499 GGTGCTGAAGAAGCGAAAAAACGTATTTATGCAACAACTGACAAAGCACG 548
BSNT_04619___ 549 CGGCGCATTAAAAAC----GCTTTCTAAC-GAAGAAGGCTTCGAATCATT 593
|||.|||||.||||| || ||| ||||||||||.|||||||||
BPUM_2802___p 549 CGGTGCATTGAAAACATTAGC-----AACAGAAGAAGGCTACGAATCATT 593
BSNT_04619___ 594 CGTTATTCCTGACGATGTCGGCGGCCGTTATTCAGTTTTAACAGCTGTAG 643
..|.||.|||||.|||||.||.||.||.||||||||.||||||||.||||
BPUM_2802___p 594 TATCATCCCTGATGATGTAGGTGGACGCTATTCAGTCTTAACAGCAGTAG 643
BSNT_04619___ 644 GTCTCTTGCCGATTGCTGTCAGCGGCGTCAACATTGATGACATGATGAAA 693
||||.||.||.||.|||||.|||||.|...||||||||.|.||||||.|.
BPUM_2802___p 644 GTCTATTACCAATCGCTGTGAGCGGTGCTGACATTGATCAGATGATGGAG 693
BSNT_04619___ 694 GGCGCCCTGG---ATGCGAGCAAAGATTTTGCAACATCTGAACTGGAAGA 740
||.|| || |.||.|||.||||.||.||..|||||||.||....||
BPUM_2802___p 694 GGTGC---GGCAAAAGCAAGCGAAGACTTCGCTTCATCTGAGCTTTCTGA 740
BSNT_04619___ 741 TAACCCAGCATACCAATATGCGGTTGTTCGCAATGTCCTTTATAATAAGG 790
.||..|.||||||||||||||.||||||||.|||||||||||.|||||.|
BPUM_2802___p 741 AAATGCGGCATACCAATATGCTGTTGTTCGTAATGTCCTTTACAATAAAG 790
BSNT_04619___ 791 GCAAAACAATTGAAATGCTCATCAACTACGAACCGGCGCTTCAATACTTT 840
|||.|||.|||||||||||.||.|||||.||.||.|.|||.|||||||||
BPUM_2802___p 791 GCAGAACGATTGAAATGCTGATTAACTATGAGCCTGGGCTACAATACTTT 840
BSNT_04619___ 841 GCGGAATGGTGGAAGCAGCTGTTCGGAGAAAGCGAAGGGAAAGATGAGAA 890
||.|||||||||||.||..|.|||||.|||||.||||||||||||||.||
BPUM_2802___p 841 GCTGAATGGTGGAAACAATTATTCGGTGAAAGTGAAGGGAAAGATGAAAA 890
BSNT_04619___ 891 GGGCATTTATCCTTCTTCAGCGAACTATTCAACAGACCTTCATTCTTTAG 940
.||.|||||||||||.||.|||||||..||||||||.||||||||..|.|
BPUM_2802___p 891 AGGAATTTATCCTTCCTCTGCGAACTTCTCAACAGATCTTCATTCACTTG 940
BSNT_04619___ 941 GCCAGTATGTACAAGAAGGCCGCAGAGATTTATTCGAAACGGTCCTGAAC 990
|.||.|||||.||||||||..|.|||||.||.||.|||||..||.||||.
BPUM_2802___p 941 GTCAATATGTCCAAGAAGGAAGAAGAGACTTGTTTGAAACAATCGTGAAT 990
BSNT_04619___ 991 GTAGAGAAGCCTAAACATGAAC-TGACAATTGAGGAAGCGGATAACGATC 1039
|||||.||||||...||||||| ||.| |||||.|.||..||..|.||.|
BPUM_2802___p 991 GTAGACAAGCCTCGTCATGAACTTGTC-ATTGAAGCAGAAGAACAAGACC 1039
BSNT_04619___ 1040 TTGACGGCTTGAACTATTTAGCCGGTAAAACTGTTGATTTCGTTAACAAG 1089
||||.||||||||||||.||||.||.|||||.||||||||||||||.||.
BPUM_2802___p 1040 TTGATGGCTTGAACTATCTAGCAGGAAAAACGGTTGATTTCGTTAATAAA 1089
BSNT_04619___ 1090 AAAGCATTCCAAGGCACGATGCTTGCCCATACAGACGGAAATGTTCCGAA 1139
||||||||..||||.|||||||||||.||||||||.|||||.||.|||||
BPUM_2802___p 1090 AAAGCATTTGAAGGAACGATGCTTGCTCATACAGATGGAAAAGTACCGAA 1139
BSNT_04619___ 1140 CTTAATCGTTAACATTCCTGAGCTAAATGCATATACTTTTGGATACCTTG 1189
..|.|||||.|..|||||||||.|..||||.||||||||.|||||.||.|
BPUM_2802___p 1140 TCTGATCGTCACAATTCCTGAGATGGATGCTTATACTTTCGGATATCTCG 1189
BSNT_04619___ 1190 TATATTTCTTCGAAAAAGCCTGCGCGATGAGCGGTTACCTCCTTGGCGTC 1239
|.||.|||||.||.|||||.|||||||||...||.||.||.||.||||||
BPUM_2802___p 1190 TTTACTTCTTTGAGAAAGCATGCGCGATGTCTGGATATCTACTAGGCGTC 1239
BSNT_04619___ 1240 AATCCGTTTGACCAGCCTGGTGTAGAAGCGTATAAAGTCAATATGTTTGC 1289
|||||.||||||||.|||||.||||||||.||||||||.|||||||||||
BPUM_2802___p 1240 AATCCATTTGACCAACCTGGCGTAGAAGCTTATAAAGTGAATATGTTTGC 1289
BSNT_04619___ 1290 GTTACTCGGCAAACCTGGCTTTGAAGAGAAAAAAGCAGAGCTTGAAAAAC 1339
.|||.|.||.|||||.|||||.||||||||||||||.||||||||||..|
BPUM_2802___p 1290 TTTATTAGGAAAACCAGGCTTCGAAGAGAAAAAAGCCGAGCTTGAAAGCC 1339
BSNT_04619___ 1340 GTCTGGAAGA---TTAA 1353
|||||.||.| .|||
BPUM_2802___p 1340 GTCTGAAACAATCGTAA 1356
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