Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04614 and BPUM_2799
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:19
# Commandline: needle
# -asequence dna-align/BSNT_04614.1.24716.seq
# -bsequence dna-align/BPUM_2799.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04614-BPUM_2799.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04614-BPUM_2799.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04614
# 2: BPUM_2799
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1124
# Identity: 653/1124 (58.1%)
# Similarity: 653/1124 (58.1%)
# Gaps: 274/1124 (24.4%)
# Score: 1808.5
#
#
#=======================================
BSNT_04614 1 ATGAAATCAAATCGGATATTTATTTCATGGCTCAGGTGGCCGTTATTTAT 50
|||||||||||.||.||.|||||..|.|||||.|||||||| |.|.|||
BPUM_2799 1 ATGAAATCAAACCGTATCTTTATCGCTTGGCTAAGGTGGCC--TCTCTAT 48
BSNT_04614 51 C--CGAATCGGGGTTATTAT---TTTATGTCTGATTCTTTTGTTCGGCCA 95
| |||||.|..||.||.|| |||.| ||.||||.||.||.||.||
BPUM_2799 49 CTTCGAATTGCCGTCATCATCTGTTTCT---TGCTTCTCTTTTTTGGACA 95
BSNT_04614 96 AATCATTTAT----ATACTTGAGCCTAAGCAGT-TCACTTCGGTATTCGA 140
|||.|| ||||||||.||.||||||| ||| |.||.|.||.||
BPUM_2799 96 ----ATTAATCGTCATACTTGAACCAAAGCAGTATCA-TACGATCTTTGA 140
BSNT_04614 141 AGGCATTTGGTGGGCTGTCGTTACGGTTTCCACAGTCGGTTATGGAGACT 190
.||.||.|||||||||.||.||||.||..|.||.|||||.|||||.||.|
BPUM_2799 141 TGGGATCTGGTGGGCTCTCATTACAGTCGCGACGGTCGGCTATGGTGATT 190
BSNT_04614 191 ATGTGCCGCACACGCCGCTGGGACAGGCAGCCGGAATACTGCTGATTTTG 240
.|||||||||.||...||..|||||....||.||.||...|||||||.||
BPUM_2799 191 TTGTGCCGCAAACCATGCCCGGACAAATCGCAGGTATGGCGCTGATTCTG 240
BSNT_04614 241 AGCGGAGCAAGCTTTGTCACAGCGTATTTCGCTAC-GTTATCAGCGGCCG 289
|.||||||||||||||||||.||.|||||.||.|| .|| ||.||||
BPUM_2799 241 ATCGGAGCAAGCTTTGTCACGGCTTATTTTGCCACACTT----GCTGCCG 286
BSNT_04614 290 C---ATTCAGCAGACAGCATCGCTACATCGAAGGAAAAGTTGC--TTA-- 332
| .|||||||.||||||.|..||..|.||||||||.||.|| |||
BPUM_2799 287 CTGTGTTCAGCAAACAGCACCATTATGTAGAAGGAAAGGTCGCGTTTAAA 336
BSNT_04614 333 --CAAAGGCCGGGACCACA--TCATTCTGATCGGGTGGAATGAAAAAACA 378
.||||| ||| |||||.|.|||||.||||||||||||||.
BPUM_2799 337 GGAAAAGG--------ACATCTCATTATCATCGGTTGGAATGAAAAAACG 378
BSNT_04614 379 AAC---CGGCTT----------------TTGAAGGACCTTCAGCT-TGCC 408
||| |.|||| |||| |.|.||| ||||
BPUM_2799 379 AACAAACTGCTTCAATCGTTTCAAACGATTGA------TCCCGCTATGCC 422
BSNT_04614 409 GCCCCTTCCAAAACAGTCGTACTAATCGATGAATCCTTAACAGAAGGCCC 458
| .|.||.||.||.|||||.|||||.|..|||||.||
BPUM_2799 423 G--------------ATTGTGCTGATTGATGACTCCTTGAAGGAAGGACC 458
BSNT_04614 459 GCTTATTGAAAACGTTCATTTCATACGCGGGCACGCTGCCGATGATGGGA 508
.|||.|.||.||.||||||||.||....||.||||...||||.|||||.|
BPUM_2799 459 TCTTCTAGAGAATGTTCATTTTATTAAAGGACACGGCACCGAGGATGGCA 508
BSNT_04614 509 CACT---GAAACGGGCCAATATTACTGAAGCGGAATCAGTGATGATTACT 555
|||| .||| |||||||||.|.|..||.||..||.||||||||||.
BPUM_2799 509 CACTTCGCAAA---GCCAATATTTCAGGTGCAGATGCACTGATGATTACC 555
BSNT_04614 556 GCCGATCAGTATAA-----AAGTGAAACTGATGCTGATATGCTGTCAGTG 600
||.||||||.|..| ||||||.| ||||||||||.| ||||
BPUM_2799 556 GCAGATCAGCACGAGAATGAAGTGACA-----GCTGATATGCAG--AGTG 598
BSNT_04614 601 CTGACTCTTTTATCTGTT---------AAAGGGCTTAATCCCCTTGCT-T 640
|||||.| .|| |||.||.||||..||||.||| |
BPUM_2799 599 -------TTTTAAC-ATTACTTGCAGCAAAAGGATTAAATCCCTCGCTCT 640
BSNT_04614 641 ACTGCATCGTCGAAATTTTGACTGACCGTTTTGTCACCAATGCAGAGCGG 690
||||..|..|.|||||.||.||.||.||.|.|||.|..|||||.|||||.
BPUM_2799 641 ACTGTTTAATTGAAATCTTAACAGATCGATATGTGAAAAATGCCGAGCGT 690
BSNT_04614 691 GCAGGCGCAAACCAAATCATCGGAACTTCAGA-----------ATTTATC 729
||.|||||.||.|||.||||....||.||.|| |||||
BPUM_2799 691 GCTGGCGCCAATCAAGTCATTCATACCTCTGATGCAGTCAATCATTTA-- 738
BSNT_04614 730 AGCCGGGCGATGCTGCAGCATT------------ACCAAGTCAA---GTT 764
|||.|..|||||| |.||..|||| |||
BPUM_2799 739 ---------ATGGTCGAGCATTTTCTTTTAAAGGAACAGTTCAAAGCGTT 779
BSNT_04614 765 ACGG-----CCGTC-------------TAAACAG--------CAGATCGG 788
||.| .|||| ||||||| ||.|.|.|
BPUM_2799 780 ACAGAAAAAACGTCATATGACCTTGCATAAACAGGTCACCATCATACCAG 829
BSNT_04614 789 AATCAAGCTGACACTTGATCAGCATGTGGAGC-TTCTTGCTGTTCCTGAC 837
.||.|||| .|| |||| |..|||.|.| |||||
BPUM_2799 830 -TTCCAGCT-TCA-TTGA----CCGGTGAAACATTCTT------------ 860
BSNT_04614 838 GAACTAAAGGGAGCGGCTTACAAAACCTGTGTTCTCTATT-------TCC 880
||| |||| .|.|| ||.||.|| ||.
BPUM_2799 861 -AAC-------AGCG--CTCCA----------TCACTTTTTAGAGCATCA 890
BSNT_04614 881 T-TGATCACAACACAACAATTATAGGCGTACAAAAAAAGGAGGGACCGAT 929
| ||||| .||.|.||..||||||||||.||.|||||.||
BPUM_2799 891 TGTGATC-----------GTTGTCGGTATACAAAAAAAAGAAGGACCCAT 929
BSNT_04614 930 GCTT---TCCCCTCCT-----------CTTACATAC--AAGGTGCTCGAA 963
| || |||.| ||| ||| |||.| |.|.|| |
BPUM_2799 930 G-TTGAATCCTC-CCTTTGATTATGAGCTT-CATCCTGAGGATG-----A 971
BSNT_04614 964 ACAGACCAATTCCTTGCCATCTAG 987
||.||.|| |||.|..|
BPUM_2799 972 ACTGATCA-------GCCTTTAA- 987
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