Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04612 and BPUM_2798

See Amino acid alignment / Visit BSNT_04612 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:19
# Commandline: needle
#    -asequence dna-align/BSNT_04612.1.24716.seq
#    -bsequence dna-align/BPUM_2798.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04612-BPUM_2798.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04612-BPUM_2798.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04612
# 2: BPUM_2798
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 299
# Identity:     142/299 (47.5%)
# Similarity:   142/299 (47.5%)
# Gaps:         109/299 (36.5%)
# Score: 331.0
# 
#
#=======================================

BSNT_04612         1 ATGACGATCTTTC-AAAGAACGATCGTGGTTTTAATCGGTACGCAGCTGG     49
                     |||.||.||.||| |||||.|| |..|..||||.||||||.|.||..|..
BPUM_2798          1 ATGTCGTTCGTTCAAAAGACCG-TACTTCTTTTTATCGGTGCTCATTTTT     49

BSNT_04612        50 CGGCATCCGCGGTGATTTTGTTTATTTTCGATTTGAAT--------TCAT     91
                     ...||||.||||||||.||..||.|.||.||.||.|||        ||||
BPUM_2798         50 TATCATCAGCGGTGATCTTACTTGTGTTTGACTTAAATGCGGTGAATCAT     99

BSNT_04612        92 AT----AATCACTTTTC----CGGCAGCTTCTCCTGGTTTTATTTTCTGA    133
                     .|    |||.|.|||||    |.||| |||            |||||   
BPUM_2798        100 TTTATGAATGATTTTTCATGGCTGCA-CTT------------TTTTC---    133

BSNT_04612       134 AAGA-----ACTGGCCGGCAGTTTCGCCTTTTATTTGTTTTCAGC-----    173
                     ||||     ||.|..|||     ||.|||||||      |.||||     
BPUM_2798        134 AAGATTTATACGGAACGG-----TCACCTTTTA------TACAGCATGCT    172

BSNT_04612       174 -AGGCCTGTTCTTTTTGCTGATTGG-ATTCTGTGCTCC------AAGCCG    215
                      |||..|.|||||.||..|.||||| |  |.|||.|||      ||    
BPUM_2798        173 TAGGTGTATTCTTCTTTTTCATTGGCA--CGGTGATCCCACTTAAA----    216

BSNT_04612       216 GAAGAAAAAGCGCATTTCTGTACACGGGAAAGAAAACTCATTAAAATAA    264
                      ||||...||                                       
BPUM_2798        217 -AAGACCTAG---------------------------------------    225


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