Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04601 and BPUM_2793

See Amino acid alignment / Visit BSNT_04601 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:17
# Commandline: needle
#    -asequence dna-align/BSNT_04601.1.24716.seq
#    -bsequence dna-align/BPUM_2793.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04601-BPUM_2793.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04601-BPUM_2793.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04601
# 2: BPUM_2793
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 278
# Identity:     168/278 (60.4%)
# Similarity:   168/278 (60.4%)
# Gaps:          52/278 (18.7%)
# Score: 450.5
# 
#
#=======================================

BSNT_04601         1 ATGAACATTCTTCA-ATATTCTTATAAAAAAAGAGGGAAAATTGAGTTTG     49
                     .||.||||| ||.| |.||||.||...|||||.|||..|||||||.|||.
BPUM_2793          1 GTGGACATT-TTAAGACATTCATACCGAAAAAAAGGACAAATTGAATTTT     49

BSNT_04601        50 TATTTGAAGGCTGGCCTCACTCAAAAGTTACAATG--GTTCCTA------     91
                     ..|||||.|..|..||.|||||      |.|  ||  ||.|.||      
BPUM_2793         50 GGTTTGATGAATTTCCGCACTC------TCC--TGCCGTCCTTACGCCCA     91

BSNT_04601        92 ----TCAAAGGCTACTATTTTGTCCGCTTTATCAAATGGAGCAGCCAGGA    137
                         |||    .|||||.|||||.||.|.|.|.|||||||||.|.||.||
BPUM_2793         92 TTCGTCA----TTACTACTTTGTTCGTTATGTAAAATGGAGCCGGCACGA    137

BSNT_04601       138 TCCAATCGTGACAAGAAATGACCTTGAAAAAATGGAG----TGGGCTGCG    183
                     |||....||.||||||||.||..|.||||||||||||    |    ||||
BPUM_2793        138 TCCGCCGGTCACAAGAAAAGATTTAGAAAAAATGGAGATCCT----TGCG    183

BSNT_04601       184 AAC-CAATATTTCGGCACAGCCCCCTTC-----TATCGAAAACGAAAGGC    227
                     ||| |.||..|| ||.|||     ||.|     |||||.||.||.|||||
BPUM_2793        184 AACACGATGCTT-GGTACA-----CTACAAGATTATCGTAAGCGCAAGGC    227

BSNT_04601       228 ATTTGAAACCCCATCGTCCCGAAAATAG    255
                     ||...|||.|||.|.|||   |.||   
BPUM_2793        228 ATACAAAAGCCCCTTGTC---ATAA---    249


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