Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04599 and BPUM_2789

See Amino acid alignment / Visit BSNT_04599 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:16
# Commandline: needle
#    -asequence dna-align/BSNT_04599___mcpB.1.24716.seq
#    -bsequence dna-align/BPUM_2789.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04599___mcpB-BPUM_2789.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04599___mcpB-BPUM_2789.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04599___mcpB
# 2: BPUM_2789
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2152
# Identity:    1360/2152 (63.2%)
# Similarity:  1360/2152 (63.2%)
# Gaps:         323/2152 (15.0%)
# Score: 3736.5
# 
#
#=======================================

BSNT_04599___      1 ATG---AAGACTTTTATCAATTGGCTTAAGAAACCGTCTATTTCAAAGAA     47
                     |||   ||.|   |.|||.|.|||.|.||.|||||.||.||||||||.||
BPUM_2789          1 ATGGGAAAAA---TGATCCAATGGTTAAAAAAACCATCCATTTCAAAAAA     47

BSNT_04599___     48 ATTAATCGTCTCATTTATTGCGA-TTCTCATTATCC---------CTATT     87
                     |||||||.|..| |||.|||..| |||   ||||||         ||...
BPUM_2789         48 ATTAATCATGGC-TTTTTTGGTAGTTC---TTATCCTGCCAACCACTGCA     93

BSNT_04599___     88 CTTA-TATTAG---AATTTAGCTCTTAC--CGAAGCGCCAGCGGAAAGCT    131
                     ||.| .|||||   |.|||     ||||  |.||  |.|||     ||||
BPUM_2789         94 CTGACAATTAGTGCATTTT-----TTACATCAAA--GACAG-----AGCT    131

BSNT_04599___    132 GGATCAGGAAATTATGGGAAATGCGAAAAACAGT---GTCGATACATTTA    178
                     .|||.|..|.||||||||.|.|||   ||..|||   |||.||.|||||.
BPUM_2789        132 AGATAAACAGATTATGGGCAGTGC---AATGAGTCAAGTCAATGCATTTG    178

BSNT_04599___    179 ATACAACTGTTACAAATG---ATCTGGGAGAAAAAGCGAAAGCAGT--CA    223
                     ||   |||.|.|..||||   ||.|.|||.|.|||||..|.||.||  |.
BPUM_2789        179 AT---ACTTTAATCAATGAGAATATAGGAAATAAAGCAGATGCTGTGGCT    225

BSNT_04599___    224 CCTTTTTCAGTGAATCTCTTAAAAGGTC----CGCATTCAAAGGGAAATC    269
                     |..|||.||  ||.||.||.|||..|||    |   |||||   ||||  
BPUM_2789        226 CTGTTTACA--GACTCACTCAAAGCGTCTAATC---TTCAA---GAAA--    265

BSNT_04599___    270 CAATCAAGAAGAG-----ATCAAAGCTAAATTTTCA-CAATATGTATCTA    313
                      ||...|||||.|     ||.||||    |.||.|| ||||.||.|...|
BPUM_2789        266 -AAAATAGAAGTGCGACCATTAAAG----AATTGCAGCAATTTGGAAAAA    310

BSNT_04599___    314 TTAAT---CAAGGAGTAGCCAGAATTTATGGGGGCGCAGATAACGGCA--    358
                     |||||   .|||..||..||...||.||||..|||.|.||.||.|| |  
BPUM_2789        311 TTAATGAAAAAGATGTTTCCGCTATCTATGCAGGCTCCGAAAAAGG-ATT    359

BSNT_04599___    359 -CTTACGTACAAGCGC-----CAAAAGAAAAATTGCCGGACGGATACGAC    402
                      .|||  |.|||...|     |||||||     ||||.||.||.|||||.
BPUM_2789        360 GTTTA--TGCAATATCCTGTTCAAAAGA-----TGCCTGATGGCTACGAT    402

BSNT_04599___    403 CCGAGACAACGCCCTTGGTACCAGGATGCGATGAAGGCCGG---CGGTGA    449
                     ||.|||.|.|||||.|||||.||.||.|||.|.|||||.||   |||..|
BPUM_2789        403 CCAAGAGAGCGCCCATGGTATCAAGAAGCGCTCAAGGCAGGAAACGGCAA    452

BSNT_04599___    450 AATTGTCGTGACAGATCCTTACGTGGCTGC-----GAGTGACGGAAGCAT    494
                     |...|||.|.|||.|.||.||.||.||.||     .||    |.||| ||
BPUM_2789        453 ACAAGTCATCACAAAACCATATGTAGCAGCCTCCACAG----GCAAG-AT    497

BSNT_04599___    495 GGTCATTACCATTGCACAGGAGCTGAAGGACGGATCTGGCGTTGTCGCCA    544
                     ||||||.||||||.|.||..|..||||.||.||.||.||.|||.|     
BPUM_2789        498 GGTCATCACCATTACTCAAAAAATGAAAGATGGCTCAGGTGTTAT-----    542

BSNT_04599___    545 TGGATATTACCATTGAT----AAATTG---------TTAGAACAAA---T    578
                     ||||       .|||||    ||||||         ||    ||||   |
BPUM_2789        543 TGGA-------CTTGATATGGAAATTGACACCCTGATT----CAAAAGTT    581

BSNT_04599___    579 GAAACAAATCAAGGTCGGAAAAGAAGGTTATGCTTTCAT--TGCAACAAA    626
                     .|||.|||||||..|.||..||.||||.|||||.|||||  ||.|  .||
BPUM_2789        582 AAAAGAAATCAAAATTGGGCAAAAAGGCTATGCCTTCATTATGGA--GAA    629

BSNT_04599___    627 AAACAAAACCTATGTCGCCCACAAGAACC-----ATAAGGCTGGAGAAAA    671
                     |.|.|||||...|.|.||     |||.||     |.|||||.||    ||
BPUM_2789        630 AGATAAAACAGTTTTAGC-----AGATCCGACCGAAAAGGCAGG----AA    670

BSNT_04599___    672 GCTTTCAGGCGACTGGG----TAGCCAAAATGTAT-----------GCGA    706
                     |   |||||..|.||.|    |||||||||| |||           ..||
BPUM_2789        671 G---TCAGGTCAATGAGAATCTAGCCAAAAT-TATTTATCAAAACAAAGA    716

BSNT_04599___    707 ATGACAGCGGTGAACTCCAG-TATACTCTTAATAACGAAGATAAAAAGAT    755
                     |.|| |||||       ||| ||.||.||.||..||..||||||||||.|
BPUM_2789        717 AGGA-AGCGG-------CAGCTACACACTCAAAGACATAGATAAAAAGGT    758

BSNT_04599___    756 GACCTATACTACAAACGAACTGACTGGTTGGAAAATAGCCGGCACAAT--    803
                     ..|.|||...||.||||||.|.|||||.||||||||.|..||.||.||  
BPUM_2789        759 TGCGTATGTGACCAACGAATTAACTGGCTGGAAAATTGGTGGAACGATGC    808

BSNT_04599___    804 --GTAT-ATGGATGAAATTAAGGATGCCTCAAAGTCTGTGCTGACTACAG    850
                       |||| |     |||.|..|.|||||..|||||.|.|||.|...|||||
BPUM_2789        809 TCGTATCA-----GAAGTAGAAGATGCAGCAAAGCCCGTGTTCCATACAG    853

BSNT_04599___    851 GAATGATTGTGCTGATT-----GCTTCCATTGTGGCAGGCGGAATTTTA-    894
                     ...|.||||||.|.|.|     ||||  ||.||.|||||        || 
BPUM_2789        854 CCCTTATTGTGTTCAGTGTGACGCTT--ATCGTAGCAGG--------TAC    893

BSNT_04599___    895 ----ATTCTGTTTATCGTTCGTTCAATTACAAAACCGTTA--AAACGTCT    938
                         ||..|.||||||||.||.||.||..|.|||...|||  .|||  ||
BPUM_2789        894 CCTCATCTTCTTTATCGTCCGCTCTATATCTAAAAGATTATCCAAC--CT    941

BSNT_04599___    939 TG-----TTCAATCATCGAAAACGATCAGCAGGGGGGATCTGACCGAAAC    983
                     ||     |||     |||||||...|||||...||.|||.||..|||.|.
BPUM_2789        942 TGCACGCTTC-----TCGAAAAAAGTCAGCGAAGGTGATTTGCGCGATAA    986

BSNT_04599___    984 GATCGAAATCCATTCAAAGGATGAGCTTGGGGAGCTTGGGGAAAGCTTCA   1033
                     |.|..|.|||||.|||.|.||.||..||||..|..|||||.||.||||.|
BPUM_2789        987 GCTTCAGATCCAATCAGATGACGAAATTGGCCAAGTTGGGAAAGGCTTTA   1036

BSNT_04599___   1034 ATGAAATG--GGACAATCTCTCCGCTCGCTGATCAGCGCTATTCAGGACT   1081
                     ||..||||  .|||  ||..|..|..|.||.||..|.||..|.||...||
BPUM_2789       1037 ATACAATGATTGAC--TCATTAAGAACCCTCATTGGTGCCGTCCAAACCT   1084

BSNT_04599___   1082 CGGT-GAACAATGTGGCCGCATCTTCC---GAACAGCTTACCGC-ATCTG   1126
                     |.|| ||| |||||   |||.||||||   |||.|.||.||||| |.| |
BPUM_2789       1085 CAGTCGAA-AATGT---CGCTTCTTCCTCAGAAGAACTGACCGCTAGC-G   1129

BSNT_04599___   1127 CCGGGCAGACGAGTAAAGCCACCGAGCATATTACGATGGCGATTGAGCAG   1176
                     |.|||||.||.||||||||.||.|||||||||||..|.||.|||||.||.
BPUM_2789       1130 CAGGGCAAACAAGTAAAGCAACAGAGCATATTACACTAGCCATTGAACAA   1179

BSNT_04599___   1177 TTCTCAAACGGAAACGAGGAG-CAAAGCGAAAAGGTTGAATCCAGCTCTC   1225
                     ||.|||||.|||||||| .|| ||||..||.||.||.|||||.|||||..
BPUM_2789       1180 TTTTCAAATGGAAACGA-AAGTCAAAATGACAAAGTCGAATCTAGCTCAG   1228

BSNT_04599___   1226 ATCAGCTGAACTTA-ATG-AATGAA----GGACTCCAGCAAGTCTCACAA   1269
                     |..||      ||| ||| ||||||    ||.||.|||||     ||..|
BPUM_2789       1229 AAGAG------TTAGATGAAATGAACCGTGGCCTTCAGCA-----CATGA   1267

BSNT_04599___   1270 A--CATCGTCAGA---TATTACAAAGGCATCTATCCAATCAACGGAAATC   1314
                     |  ..|||.|.||   .|||||.....||||.|||.|||||||.||.|||
BPUM_2789       1268 ATGAGTCGGCTGAATCCATTACTGCTTCATCGATCAAATCAACAGATATC   1317

BSNT_04599___   1315 GCC--GGAACGGGTGAGA-AGTTTGTGCAGCAGACAG--TCGGACAAATG   1359
                     |||  ||||.|.|   || ||.||||..|..|.||||  ||  .||||||
BPUM_2789       1318 GCCGGGGAAGGCG---GACAGCTTGTCGAAAAAACAGCTTC--TCAAATG   1362

BSNT_04599___   1360 AA-CTCGATTAATCAATCTGTTCAGCAGGCTGA-AGCTGTTGTCA--AAG   1405
                     || .|| |||.||||.||.||..|..|.||.|| |.|    ||||  |..
BPUM_2789       1363 AATGTC-ATTGATCAGTCCGTGAAAAAAGCAGAGAAC----GTCATCAGC   1407

BSNT_04599___   1406 GCT-TAGAAGGAAAATCAAAAGACAT--CACAAGCATTTTGAGAGTCATC   1452
                     ||| |.|||.|.||||||||||||||  |||||  |||.|..|.||||||
BPUM_2789       1408 GCTCTTGAAAGTAAATCAAAAGACATTACACAA--ATTCTAGGTGTCATC   1455

BSNT_04599___   1453 AACGGAATCGCTGACCAAACAAATCTGCTTGCACTAAATGCAGCCATTGA   1502
                     ||.|||||.||.||||||||.|||||.|||||.|||||||||||.|||||
BPUM_2789       1456 AATGGAATTGCCGACCAAACGAATCTACTTGCGCTAAATGCAGCAATTGA   1505

BSNT_04599___   1503 AGCGGCGCGTGCCGGAGAGTCAGGACGCGGCTTCTCTGTCGTAGCGGAGG   1552
                     .||.||..|.||.||.||.||.||..|.||||||||.||.|||||.||.|
BPUM_2789       1506 GGCAGCAAGAGCTGGGGAATCCGGCAGAGGCTTCTCCGTTGTAGCAGAAG   1555

BSNT_04599___   1553 AGGTGCGCAAGCTGGCTGTCCAATCAGCCGATTCAGCGAAAGAAATCGAA   1602
                     |.||..|.||.||.|||||.|||||||||.||||.||||||||||||||.
BPUM_2789       1556 AAGTAAGAAAACTAGCTGTTCAATCAGCCAATTCGGCGAAAGAAATCGAG   1605

BSNT_04599___   1603 AAGCTGATCCAAGAAATCGTCGCAGAAATCGAAACCTCTCT-TCACA---   1648
                     ||..||||..||||||||||...|||.|||||      |.| |||||   
BPUM_2789       1606 AATTTGATTAAAGAAATCGTTCAAGACATCGA------TGTATCACAGGA   1649

BSNT_04599___   1649 --TGTTTAAAGAGGTCAATCAGGAAGTACAGTCCGGACTT--GTTGTCAC   1694
                       |.||.|..|.|||.||||..|||||.||.||.|| |||  |.| ||||
BPUM_2789       1650 AGTATTCACTGCGGTGAATCGAGAAGTTCAATCAGG-CTTAAGCT-TCAC   1697

BSNT_04599___   1695 AG-ACAATACAAAAGAAAGCTTCCAGAGCATTTTCAGCATGACAAACGAA   1743
                     .| |||| ||||.||.|||||||||.|..||||||...|.||||||.|||
BPUM_2789       1698 TGAACAA-ACAAGAGTAAGCTTCCACAATATTTTCGAAACGACAAAAGAA   1746

BSNT_04599___   1744 ATCGCAGGCAAGCTGCAAACGATGAATTCCACCGTCGAGCAGCTGTCAGA   1793
                     ||..|.|.||||||.|||||.||||||...||.||.|..|||||.|||.|
BPUM_2789       1747 ATTTCTGACAAGCTTCAAACAATGAATCAAACAGTTGTTCAGCTTTCAAA   1796

BSNT_04599___   1794 CCGTTC-ACAGCATGTTTCAGCAGCAGTCAGCGGCATTGCAGACGTGTCG   1842
                     ..|.|| .|| |||||.||||..||.|||.|.|..|||||||||||.||.
BPUM_2789       1797 TGGCTCTGCA-CATGTGTCAGAGGCTGTCCGTGAGATTGCAGACGTCTCA   1845

BSNT_04599___   1843 AAAGAAAGCTCGGCAAGCATCCAGGACATTGCCGCATCAGCTGAAGAACA   1892
                     ...||||||||.||||.|||.||.||||||||.||.|||||.||||||||
BPUM_2789       1846 CGTGAAAGCTCCGCAAACATTCAAGACATTGCGGCTTCAGCGGAAGAACA   1895

BSNT_04599___   1893 GCTTGCTTCCATGGAAGAAATCAGTTCCTCAGCGACCACTCTTGC-GCAG   1941
                     |||.||.||.||||||||||||||.|||||..|..|.||.|||.| .|| 
BPUM_2789       1896 GCTCGCATCTATGGAAGAAATCAGCTCCTCCTCTGCTACACTTTCATCA-   1944

BSNT_04599___   1942 ATGGCAGAAGAGCTTCGCGATCTGACGAAAC----AATTTAAAATCGAGT   1987
                     |||||||||||..|.||.|||.|    ||.|    ||||||||.||||.|
BPUM_2789       1945 ATGGCAGAAGAATTGCGTGATTT----AATCAGCAAATTTAAAGTCGAAT   1990

BSNT_04599___   1988 AA   1989
                     |.
BPUM_2789       1991 AG   1992


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