Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04599 and BPUM_2789
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:16
# Commandline: needle
# -asequence dna-align/BSNT_04599___mcpB.1.24716.seq
# -bsequence dna-align/BPUM_2789.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04599___mcpB-BPUM_2789.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04599___mcpB-BPUM_2789.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04599___mcpB
# 2: BPUM_2789
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2152
# Identity: 1360/2152 (63.2%)
# Similarity: 1360/2152 (63.2%)
# Gaps: 323/2152 (15.0%)
# Score: 3736.5
#
#
#=======================================
BSNT_04599___ 1 ATG---AAGACTTTTATCAATTGGCTTAAGAAACCGTCTATTTCAAAGAA 47
||| ||.| |.|||.|.|||.|.||.|||||.||.||||||||.||
BPUM_2789 1 ATGGGAAAAA---TGATCCAATGGTTAAAAAAACCATCCATTTCAAAAAA 47
BSNT_04599___ 48 ATTAATCGTCTCATTTATTGCGA-TTCTCATTATCC---------CTATT 87
|||||||.|..| |||.|||..| ||| |||||| ||...
BPUM_2789 48 ATTAATCATGGC-TTTTTTGGTAGTTC---TTATCCTGCCAACCACTGCA 93
BSNT_04599___ 88 CTTA-TATTAG---AATTTAGCTCTTAC--CGAAGCGCCAGCGGAAAGCT 131
||.| .||||| |.||| |||| |.|| |.||| ||||
BPUM_2789 94 CTGACAATTAGTGCATTTT-----TTACATCAAA--GACAG-----AGCT 131
BSNT_04599___ 132 GGATCAGGAAATTATGGGAAATGCGAAAAACAGT---GTCGATACATTTA 178
.|||.|..|.||||||||.|.||| ||..||| |||.||.|||||.
BPUM_2789 132 AGATAAACAGATTATGGGCAGTGC---AATGAGTCAAGTCAATGCATTTG 178
BSNT_04599___ 179 ATACAACTGTTACAAATG---ATCTGGGAGAAAAAGCGAAAGCAGT--CA 223
|| |||.|.|..|||| ||.|.|||.|.|||||..|.||.|| |.
BPUM_2789 179 AT---ACTTTAATCAATGAGAATATAGGAAATAAAGCAGATGCTGTGGCT 225
BSNT_04599___ 224 CCTTTTTCAGTGAATCTCTTAAAAGGTC----CGCATTCAAAGGGAAATC 269
|..|||.|| ||.||.||.|||..||| | ||||| ||||
BPUM_2789 226 CTGTTTACA--GACTCACTCAAAGCGTCTAATC---TTCAA---GAAA-- 265
BSNT_04599___ 270 CAATCAAGAAGAG-----ATCAAAGCTAAATTTTCA-CAATATGTATCTA 313
||...|||||.| ||.|||| |.||.|| ||||.||.|...|
BPUM_2789 266 -AAAATAGAAGTGCGACCATTAAAG----AATTGCAGCAATTTGGAAAAA 310
BSNT_04599___ 314 TTAAT---CAAGGAGTAGCCAGAATTTATGGGGGCGCAGATAACGGCA-- 358
||||| .|||..||..||...||.||||..|||.|.||.||.|| |
BPUM_2789 311 TTAATGAAAAAGATGTTTCCGCTATCTATGCAGGCTCCGAAAAAGG-ATT 359
BSNT_04599___ 359 -CTTACGTACAAGCGC-----CAAAAGAAAAATTGCCGGACGGATACGAC 402
.||| |.|||...| ||||||| ||||.||.||.|||||.
BPUM_2789 360 GTTTA--TGCAATATCCTGTTCAAAAGA-----TGCCTGATGGCTACGAT 402
BSNT_04599___ 403 CCGAGACAACGCCCTTGGTACCAGGATGCGATGAAGGCCGG---CGGTGA 449
||.|||.|.|||||.|||||.||.||.|||.|.|||||.|| |||..|
BPUM_2789 403 CCAAGAGAGCGCCCATGGTATCAAGAAGCGCTCAAGGCAGGAAACGGCAA 452
BSNT_04599___ 450 AATTGTCGTGACAGATCCTTACGTGGCTGC-----GAGTGACGGAAGCAT 494
|...|||.|.|||.|.||.||.||.||.|| .|| |.||| ||
BPUM_2789 453 ACAAGTCATCACAAAACCATATGTAGCAGCCTCCACAG----GCAAG-AT 497
BSNT_04599___ 495 GGTCATTACCATTGCACAGGAGCTGAAGGACGGATCTGGCGTTGTCGCCA 544
||||||.||||||.|.||..|..||||.||.||.||.||.|||.|
BPUM_2789 498 GGTCATCACCATTACTCAAAAAATGAAAGATGGCTCAGGTGTTAT----- 542
BSNT_04599___ 545 TGGATATTACCATTGAT----AAATTG---------TTAGAACAAA---T 578
|||| .||||| |||||| || |||| |
BPUM_2789 543 TGGA-------CTTGATATGGAAATTGACACCCTGATT----CAAAAGTT 581
BSNT_04599___ 579 GAAACAAATCAAGGTCGGAAAAGAAGGTTATGCTTTCAT--TGCAACAAA 626
.|||.|||||||..|.||..||.||||.|||||.||||| ||.| .||
BPUM_2789 582 AAAAGAAATCAAAATTGGGCAAAAAGGCTATGCCTTCATTATGGA--GAA 629
BSNT_04599___ 627 AAACAAAACCTATGTCGCCCACAAGAACC-----ATAAGGCTGGAGAAAA 671
|.|.|||||...|.|.|| |||.|| |.|||||.|| ||
BPUM_2789 630 AGATAAAACAGTTTTAGC-----AGATCCGACCGAAAAGGCAGG----AA 670
BSNT_04599___ 672 GCTTTCAGGCGACTGGG----TAGCCAAAATGTAT-----------GCGA 706
| |||||..|.||.| |||||||||| ||| ..||
BPUM_2789 671 G---TCAGGTCAATGAGAATCTAGCCAAAAT-TATTTATCAAAACAAAGA 716
BSNT_04599___ 707 ATGACAGCGGTGAACTCCAG-TATACTCTTAATAACGAAGATAAAAAGAT 755
|.|| ||||| ||| ||.||.||.||..||..||||||||||.|
BPUM_2789 717 AGGA-AGCGG-------CAGCTACACACTCAAAGACATAGATAAAAAGGT 758
BSNT_04599___ 756 GACCTATACTACAAACGAACTGACTGGTTGGAAAATAGCCGGCACAAT-- 803
..|.|||...||.||||||.|.|||||.||||||||.|..||.||.||
BPUM_2789 759 TGCGTATGTGACCAACGAATTAACTGGCTGGAAAATTGGTGGAACGATGC 808
BSNT_04599___ 804 --GTAT-ATGGATGAAATTAAGGATGCCTCAAAGTCTGTGCTGACTACAG 850
|||| | |||.|..|.|||||..|||||.|.|||.|...|||||
BPUM_2789 809 TCGTATCA-----GAAGTAGAAGATGCAGCAAAGCCCGTGTTCCATACAG 853
BSNT_04599___ 851 GAATGATTGTGCTGATT-----GCTTCCATTGTGGCAGGCGGAATTTTA- 894
...|.||||||.|.|.| |||| ||.||.||||| ||
BPUM_2789 854 CCCTTATTGTGTTCAGTGTGACGCTT--ATCGTAGCAGG--------TAC 893
BSNT_04599___ 895 ----ATTCTGTTTATCGTTCGTTCAATTACAAAACCGTTA--AAACGTCT 938
||..|.||||||||.||.||.||..|.|||...||| .||| ||
BPUM_2789 894 CCTCATCTTCTTTATCGTCCGCTCTATATCTAAAAGATTATCCAAC--CT 941
BSNT_04599___ 939 TG-----TTCAATCATCGAAAACGATCAGCAGGGGGGATCTGACCGAAAC 983
|| ||| |||||||...|||||...||.|||.||..|||.|.
BPUM_2789 942 TGCACGCTTC-----TCGAAAAAAGTCAGCGAAGGTGATTTGCGCGATAA 986
BSNT_04599___ 984 GATCGAAATCCATTCAAAGGATGAGCTTGGGGAGCTTGGGGAAAGCTTCA 1033
|.|..|.|||||.|||.|.||.||..||||..|..|||||.||.||||.|
BPUM_2789 987 GCTTCAGATCCAATCAGATGACGAAATTGGCCAAGTTGGGAAAGGCTTTA 1036
BSNT_04599___ 1034 ATGAAATG--GGACAATCTCTCCGCTCGCTGATCAGCGCTATTCAGGACT 1081
||..|||| .||| ||..|..|..|.||.||..|.||..|.||...||
BPUM_2789 1037 ATACAATGATTGAC--TCATTAAGAACCCTCATTGGTGCCGTCCAAACCT 1084
BSNT_04599___ 1082 CGGT-GAACAATGTGGCCGCATCTTCC---GAACAGCTTACCGC-ATCTG 1126
|.|| ||| ||||| |||.|||||| |||.|.||.||||| |.| |
BPUM_2789 1085 CAGTCGAA-AATGT---CGCTTCTTCCTCAGAAGAACTGACCGCTAGC-G 1129
BSNT_04599___ 1127 CCGGGCAGACGAGTAAAGCCACCGAGCATATTACGATGGCGATTGAGCAG 1176
|.|||||.||.||||||||.||.|||||||||||..|.||.|||||.||.
BPUM_2789 1130 CAGGGCAAACAAGTAAAGCAACAGAGCATATTACACTAGCCATTGAACAA 1179
BSNT_04599___ 1177 TTCTCAAACGGAAACGAGGAG-CAAAGCGAAAAGGTTGAATCCAGCTCTC 1225
||.|||||.|||||||| .|| ||||..||.||.||.|||||.|||||..
BPUM_2789 1180 TTTTCAAATGGAAACGA-AAGTCAAAATGACAAAGTCGAATCTAGCTCAG 1228
BSNT_04599___ 1226 ATCAGCTGAACTTA-ATG-AATGAA----GGACTCCAGCAAGTCTCACAA 1269
|..|| ||| ||| |||||| ||.||.||||| ||..|
BPUM_2789 1229 AAGAG------TTAGATGAAATGAACCGTGGCCTTCAGCA-----CATGA 1267
BSNT_04599___ 1270 A--CATCGTCAGA---TATTACAAAGGCATCTATCCAATCAACGGAAATC 1314
| ..|||.|.|| .|||||.....||||.|||.|||||||.||.|||
BPUM_2789 1268 ATGAGTCGGCTGAATCCATTACTGCTTCATCGATCAAATCAACAGATATC 1317
BSNT_04599___ 1315 GCC--GGAACGGGTGAGA-AGTTTGTGCAGCAGACAG--TCGGACAAATG 1359
||| ||||.|.| || ||.||||..|..|.|||| || .||||||
BPUM_2789 1318 GCCGGGGAAGGCG---GACAGCTTGTCGAAAAAACAGCTTC--TCAAATG 1362
BSNT_04599___ 1360 AA-CTCGATTAATCAATCTGTTCAGCAGGCTGA-AGCTGTTGTCA--AAG 1405
|| .|| |||.||||.||.||..|..|.||.|| |.| |||| |..
BPUM_2789 1363 AATGTC-ATTGATCAGTCCGTGAAAAAAGCAGAGAAC----GTCATCAGC 1407
BSNT_04599___ 1406 GCT-TAGAAGGAAAATCAAAAGACAT--CACAAGCATTTTGAGAGTCATC 1452
||| |.|||.|.|||||||||||||| ||||| |||.|..|.||||||
BPUM_2789 1408 GCTCTTGAAAGTAAATCAAAAGACATTACACAA--ATTCTAGGTGTCATC 1455
BSNT_04599___ 1453 AACGGAATCGCTGACCAAACAAATCTGCTTGCACTAAATGCAGCCATTGA 1502
||.|||||.||.||||||||.|||||.|||||.|||||||||||.|||||
BPUM_2789 1456 AATGGAATTGCCGACCAAACGAATCTACTTGCGCTAAATGCAGCAATTGA 1505
BSNT_04599___ 1503 AGCGGCGCGTGCCGGAGAGTCAGGACGCGGCTTCTCTGTCGTAGCGGAGG 1552
.||.||..|.||.||.||.||.||..|.||||||||.||.|||||.||.|
BPUM_2789 1506 GGCAGCAAGAGCTGGGGAATCCGGCAGAGGCTTCTCCGTTGTAGCAGAAG 1555
BSNT_04599___ 1553 AGGTGCGCAAGCTGGCTGTCCAATCAGCCGATTCAGCGAAAGAAATCGAA 1602
|.||..|.||.||.|||||.|||||||||.||||.||||||||||||||.
BPUM_2789 1556 AAGTAAGAAAACTAGCTGTTCAATCAGCCAATTCGGCGAAAGAAATCGAG 1605
BSNT_04599___ 1603 AAGCTGATCCAAGAAATCGTCGCAGAAATCGAAACCTCTCT-TCACA--- 1648
||..||||..||||||||||...|||.||||| |.| |||||
BPUM_2789 1606 AATTTGATTAAAGAAATCGTTCAAGACATCGA------TGTATCACAGGA 1649
BSNT_04599___ 1649 --TGTTTAAAGAGGTCAATCAGGAAGTACAGTCCGGACTT--GTTGTCAC 1694
|.||.|..|.|||.||||..|||||.||.||.|| ||| |.| ||||
BPUM_2789 1650 AGTATTCACTGCGGTGAATCGAGAAGTTCAATCAGG-CTTAAGCT-TCAC 1697
BSNT_04599___ 1695 AG-ACAATACAAAAGAAAGCTTCCAGAGCATTTTCAGCATGACAAACGAA 1743
.| |||| ||||.||.|||||||||.|..||||||...|.||||||.|||
BPUM_2789 1698 TGAACAA-ACAAGAGTAAGCTTCCACAATATTTTCGAAACGACAAAAGAA 1746
BSNT_04599___ 1744 ATCGCAGGCAAGCTGCAAACGATGAATTCCACCGTCGAGCAGCTGTCAGA 1793
||..|.|.||||||.|||||.||||||...||.||.|..|||||.|||.|
BPUM_2789 1747 ATTTCTGACAAGCTTCAAACAATGAATCAAACAGTTGTTCAGCTTTCAAA 1796
BSNT_04599___ 1794 CCGTTC-ACAGCATGTTTCAGCAGCAGTCAGCGGCATTGCAGACGTGTCG 1842
..|.|| .|| |||||.||||..||.|||.|.|..|||||||||||.||.
BPUM_2789 1797 TGGCTCTGCA-CATGTGTCAGAGGCTGTCCGTGAGATTGCAGACGTCTCA 1845
BSNT_04599___ 1843 AAAGAAAGCTCGGCAAGCATCCAGGACATTGCCGCATCAGCTGAAGAACA 1892
...||||||||.||||.|||.||.||||||||.||.|||||.||||||||
BPUM_2789 1846 CGTGAAAGCTCCGCAAACATTCAAGACATTGCGGCTTCAGCGGAAGAACA 1895
BSNT_04599___ 1893 GCTTGCTTCCATGGAAGAAATCAGTTCCTCAGCGACCACTCTTGC-GCAG 1941
|||.||.||.||||||||||||||.|||||..|..|.||.|||.| .||
BPUM_2789 1896 GCTCGCATCTATGGAAGAAATCAGCTCCTCCTCTGCTACACTTTCATCA- 1944
BSNT_04599___ 1942 ATGGCAGAAGAGCTTCGCGATCTGACGAAAC----AATTTAAAATCGAGT 1987
|||||||||||..|.||.|||.| ||.| ||||||||.||||.|
BPUM_2789 1945 ATGGCAGAAGAATTGCGTGATTT----AATCAGCAAATTTAAAGTCGAAT 1990
BSNT_04599___ 1988 AA 1989
|.
BPUM_2789 1991 AG 1992
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