Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04597 and BPUM_2788
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:15
# Commandline: needle
# -asequence dna-align/BSNT_04597.1.24716.seq
# -bsequence dna-align/BPUM_2788.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04597-BPUM_2788.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04597-BPUM_2788.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04597
# 2: BPUM_2788
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2126
# Identity: 1040/2126 (48.9%)
# Similarity: 1040/2126 (48.9%)
# Gaps: 748/2126 (35.2%)
# Score: 2663.0
#
#
#=======================================
BSNT_04597 0 -------------------------------------------------- 0
BPUM_2788 1 ATGAAAAAAATCAACTTTTTTAAGCACTTTACAATGTCGAAGAAATTAAT 50
BSNT_04597 0 -------------------------------------------------- 0
BPUM_2788 51 TACTGCATTCTTAGCGATTCTCCTAGTGCCAATTCTCGTATTGGCAGCAT 100
BSNT_04597 0 -------------------------------------------------- 0
BPUM_2788 101 TTTCTTATGAAGTGGCATCCAAATCTCTCAATGATGAGATTATGTCTAGT 150
BSNT_04597 0 -------------------------------------------------- 0
BPUM_2788 151 GCTGCAAATGGTGTTCAGCAATTAAACGAACTGATTAATAAAGATGTACA 200
BSNT_04597 1 ---------------------------------AT------------GCC 5
|| ||.
BPUM_2788 201 GCCTAAAATTGATATCGTTTCTTATTTGTCCAAATCAGTGAAAAAGAGCG 250
BSNT_04597 6 AAGTGACTT-------TAATGCTTT------------------------- 23
||.|||||| .||.|.|||
BPUM_2788 251 AATTGACTTCTAAAAACAAGGATTTACTTAAGGTCAAATTAGAGCAATTA 300
BSNT_04597 24 ---GGAAC-------GAGATTG-----GTA--CAAAGAAG----CAATGG 52
|.||| ||||||| ||| ||..|.|| .|||||
BPUM_2788 301 TCAGAAACCGACGAAGAGATTGTGGAAGTATTCATTGCAGATCAAAATGG 350
BSNT_04597 53 --------CCA---------------ATAAAG--------------GCAA 65
||| |||||| ||||
BPUM_2788 351 TAAACTAACCAAATATTCCGAGATTCATAAAGATAGTGCCGCAAGTGCAA 400
BSNT_04597 66 ------------------AACAATTG-------------------TCA-- 76
||||||.| |||
BPUM_2788 401 AAAACGAACCTTGGTTTCAACAATCGATGGGAGATAAGAAACTCATCATT 450
BSNT_04597 77 -CTGAGCCTTATGAATCG--ATTTCATCAGGAAAAATGGTCGTCACCATC 123
|.||.||||.|| ||| |..|||||.|...|..||.||.||||.||
BPUM_2788 451 TCAGATCCTTTTG--TCGACAAGTCATCCGATGACCTGCTCATCACAAT- 497
BSNT_04597 124 GCACGTCA-AACGGT----GGATGGGTCAGGTGTTGTCGCCATTGATATG 168
.||| |||.|| .|||||.||.||||| .||||..||.
BPUM_2788 498 ----ATCAGAACAGTTAGCAGATGGATCTGGTGT------GATTGGGATC 537
BSNT_04597 169 AAAA-----TTGATGACTTAG-TCACTACCGCGAAAG---------GAAT 203
||.| ||||..|| | ||| || |||| |.||
BPUM_2788 538 AACATGCGCTTGAACAC---GATCA-TA-----AAAGATGCAAACAGCAT 578
BSNT_04597 204 CAATATCGGAAAAGAAGGCTATGCTTTTATTTTGA--------------- 238
|||.||.||.||||||||||||||.|||.||..||
BPUM_2788 579 CAAGATTGGTAAAGAAGGCTATGCGTTTGTTGCGACTCCAGATCAGCATT 628
BSNT_04597 239 -----GCC---AAAACA-AGAAAGTCATCGCCTACTCCGGAGAAAAAGCG 279
||| |||||| |.|| |||| ||.||.|||..|
BPUM_2788 629 ATATTGCCCATAAAACAGACAA-------GCCT-----GGGGAGAAATTG 666
BSNT_04597 280 GGAACAGAGCTAAAAGGGGACTGGGTTGAT----AAGCTCTACAAGGATA 325
|||| .||..||.|| |||.|.| |.||||
BPUM_2788 667 ---ACAG-------------GTGATTTCATCACGAAGTTGT---ATGATA 697
BSNT_04597 326 AAA------GCGGGGACTTTGAATATACGTACAAAGGCAAAAAG---AAA 366
||| ||.| |||..|||||...|||||.|| |.|| ||.
BPUM_2788 698 AAAAACAAGGCAG---CTTCAAATATGAATACAATGG---ACAGCCTAAG 741
BSNT_04597 367 AAAATGGCATTTGCAACAAGCGAAACAACAGGCTGGAAAATCAGC----- 411
.|||||...||||..||||..|||.|||||||||||| |||
BPUM_2788 742 CAAATGTTTTTTGACACAAATGAATCAACAGGCTGGA-----AGCTGGCT 786
BSNT_04597 412 GGCACGATGTATGCAAACGAGATTCACGATGCTGCA-AG-CAGGGTTC-- 457
||.||||||||||....|||.|||||.||.|||||| || |||...||
BPUM_2788 787 GGAACGATGTATGTTGGCGAAATTCAAGAAGCTGCACAGCCAGTACTCGA 836
BSNT_04597 458 --------TGATCA---TGGCTTCAATCGTTCTGGCGATTGCCATCGCAG 496
|||||| |||| .||| ||||||||||| ||
BPUM_2788 837 CTTAACAATGATCATACTGGC------AGTT---GCGATTGCCAT---AG 874
BSNT_04597 497 CTGGAATGACGGCGATTTATTTTGTGATTCGATCCATCACAAAGCCATTG 546
..||||| .||||||||||||.|.|||..|||.|||..|||||||.||
BPUM_2788 875 GCGGAAT---CGCGATTTATTTTATTATTAAATCAATCCGAAAGCCACTG 921
BSNT_04597 547 AGA-CGCATTGTC-GCATCCGCTGAAAAAATTAGTGAAGGCGATCTAACC 594
|.| ||| |.|| |.|||.|||||.|||||.|||.|.||.|||||.|||
BPUM_2788 922 ATAGCGC--TCTCTGAATCGGCTGAGAAAATCAGTCAGGGTGATCTGACC 969
BSNT_04597 595 GAAACGATTGAAATCAATTCAAAAGATGAACTCG----GCGTTCTGAGCG 640
.|....||||||.|...|.|..|.||||||.||| ||.| |||
BPUM_2788 970 CAGCATATTGAAGTTCGTACGCACGATGAAATCGGAAAGCTT-----GCG 1014
BSNT_04597 641 -AGAGCTTCAATCATATGGCACACTCGCTTCGCTCG------CTCATTCA 683
|||||||.||..|.|||.|| ||...||| | .||||.||
BPUM_2788 1015 CAGAGCTTTAACGACATGTCA-----GCAAAGCT-GAAACAAGTCATACA 1058
BSNT_04597 684 CGGGATCAAAGACTCAGTAGAACACGTTGCCTCATCGTCTGAAGAGCTGA 733
.|...||.||.|.||..|.|||.|.||.|||.|.||.|||||||||.|.|
BPUM_2788 1059 AGCTGTCCAAAATTCCATTGAAAATGTGGCCGCCTCTTCTGAAGAGTTAA 1108
BSNT_04597 734 CTGCATCGGCAG-ACCAGACAAGCAG----AGCCACTGAGCACATTAC-- 776
|.|| ||| .|..||||..||| |||.||||||||.||.||
BPUM_2788 1109 CAGC-----CAGTGCGGGACAGACAGCTCAAGCGACTGAGCATATCACAT 1153
BSNT_04597 777 GATGGCTATCGAGCAATTTTCAAACGGCAGTGAAAGCCAAAGCGA----- 821
.|| ||||.||.||.||.||||||.|||.||||...||||..||
BPUM_2788 1154 CAT--CTATTGAACAGTTCTCAAACAGCAATGAACATCAAAATGATATGA 1201
BSNT_04597 822 --GAAAATAG------------AAACGACA---ACCGAA--------CAA 846
|||||.|| .|||||.| |.||.| ||.
BPUM_2788 1202 TCGAAAAAAGCTCAGTCCAGTTGAACGAAATGGATCGCAGCTTGTCCCAT 1251
BSNT_04597 847 AT--------------------TAATGAAAT----GAATG---------- 862
|| |.|||.||| ||.||
BPUM_2788 1252 ATGGTCAATACGACCTCTCATATGATGGAATCGTCGATTGATTCGAGCAA 1301
BSNT_04597 863 -ACGGAT--------TGGCAGAGCT------------GGCGCGCCAAATG 891
||||.| ||| |||.|| .||..|.||||||
BPUM_2788 1302 AACGGCTCAGGCTGGTGG-AGAACTTGTTCAAAAAACAGCAGGGCAAATG 1350
BSNT_04597 892 AACACAATTGACCATTCTGTAAAAGCAGCGGAACAAGTGGTGAAAGGGCT 941
.|.||.||.||.||..|.|||||||.|||.||.|..|||.|..||||..|
BPUM_2788 1351 CAAACCATCGAGCAGGCAGTAAAAGAAGCAGAGCTTGTGATTCAAGGCTT 1400
BSNT_04597 942 GGAGATCAAATCAAAGGATATCACGAATATTTTGCGTGTCATCAACGGCA 991
.|||...||||||||||||||.|||||.|||.||.|.|||||.|||||||
BPUM_2788 1401 AGAGCAGAAATCAAAGGATATAACGAACATTCTGGGGGTCATTAACGGCA 1450
BSNT_04597 992 TTGCGGATCAAACCAATCTTTTGGCTTTAAATGCCGCCATTGAAGCGGCC 1041
||||.||.||.||||||||..|.|||||||||||.||.||.|||||.||.
BPUM_2788 1451 TTGCCGACCAGACCAATCTCCTAGCTTTAAATGCTGCGATAGAAGCCGCA 1500
BSNT_04597 1042 AGAGCGGGTGAATACGGACGGGGCTTCTCAGTCGTCGCTGAGGAAGTGAG 1091
.||||.||.|||...||..|.||.|||||.||.||.||.||.|||||..|
BPUM_2788 1501 CGAGCAGGAGAAGCAGGTAGAGGTTTCTCTGTTGTTGCAGAAGAAGTTCG 1550
BSNT_04597 1092 AAAGCTCGCGGTACAGTCGGCTGA--CTCGGCAAAAGAAATTGAATCGCT 1139
.|||||.||.|..||.||.| || |||..||||.|||||||||...||
BPUM_2788 1551 GAAGCTGGCAGAGCAATCAG--GAAGCTCATCAAAGGAAATTGAAAGCCT 1598
BSNT_04597 1140 GATCAGTGAAATAGTAAAAGAAATTCACACATCACTGAACGTGCTTCAGT 1189
||..|..||.||.|||.|.||||||.|.|.|||.|.||||.||.|
BPUM_2788 1599 GACGAACGAGATTGTAGAGGAAATTGAAAAATCTCAGAACATGTT----- 1643
BSNT_04597 1190 CCGTAAACAA--AGAAGTTGAA--ACA---GGGCTT--GTCATGACGGAT 1230
||||||| ||..|.|||| ||| .||.|| .| ||.||.|||
BPUM_2788 1644 ---TAAACAAGTAGCGGGTGAAGTACAATCTGGATTAAAT-ATTACAGAT 1689
BSNT_04597 1231 GAAACTAAACAGAGCTTCAAACATATATCGCAAATGACCAATCAAATTGC 1280
|||||.|||...|||||..| |.||||.|||.||.||| |
BPUM_2788 1690 GAAACGAAAATTAGCTTTGA---------GAAAATCACCGATAAAA---C 1727
BSNT_04597 1281 TTCCGAGCTG-CAAAACATGAATGCGACGGTTGA--GGAGCTGTCAGCGG 1327
.||.||..|| ||.|||| ||||..||...||| |||.|.|.||
BPUM_2788 1728 ATCAGAAATGACAGAACA--AATGAAACAAATGAACGGAACGGCCA---- 1771
BSNT_04597 1328 GAGCTCAAGAAATTTCCGCA--GCTTCAAATGATA--TCACA-GC----- 1367
|||||.|.| |||| || |||||||||| ||||| ||
BPUM_2788 1772 ------AAGAACTCT-CGCATGGC-TCAAATGATATTTCACATGCGGTGA 1813
BSNT_04597 1368 --CATTTCTAAG-----------GAAAGCTCGGATGGCATCCAAGATATC 1404
||..||.||| ||||||||.|..|||.|||||||||||
BPUM_2788 1814 ATCAAATCAAAGAGCTTTCACGAGAAAGCTCCGCAGGCTTCCAAGATATC 1863
BSNT_04597 1405 GCCGCTTCAGCTGAGGAACAGCTGGCATCCATGGAGGAGATTAGTTCATC 1454
||.||.||.||.||.||||||||||||||.|||||.|||||.||||| |
BPUM_2788 1864 GCAGCATCTGCAGAAGAACAGCTGGCATCTATGGAAGAGATCAGTTC--C 1911
BSNT_04597 1455 TGCACTG--ACGCT-TGAAAGAATGTCTGAAGAACTCCGTGATCTGACAA 1501
|.|.||| |||.| |...|| |||.|.|||||..|..|.||.||.|..|
BPUM_2788 1912 TCCTCTGCTACGTTATCTCAG-ATGGCAGAAGAGTTAAGAGAGCTCATTA 1960
BSNT_04597 1502 AACAATTTAAAGTGGATAGACAATAG 1527
|||||||||||.| |||.
BPUM_2788 1961 AACAATTTAAAAT--ATAA------- 1977
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