Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04596 and BPUM_2787
See
Amino acid alignment /
Visit
BSNT_04596 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:15
# Commandline: needle
# -asequence dna-align/BSNT_04596___mcpA.1.24716.seq
# -bsequence dna-align/BPUM_2787.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04596___mcpA-BPUM_2787.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04596___mcpA-BPUM_2787.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04596___mcpA
# 2: BPUM_2787
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2180
# Identity: 1349/2180 (61.9%)
# Similarity: 1349/2180 (61.9%)
# Gaps: 382/2180 (17.5%)
# Score: 3800.0
#
#
#=======================================
BSNT_04596___ 1 ATGATGAAAAAAATACTCCAACTCATAAAACAAAGATCAATTACACGGAA 50
||||||...||||...|..|||.|||.| .|||.|||.||...||
BPUM_2787 1 ---ATGAAATTCATACAGTATTTCAGAAAGC---CATCTATTTCAAAAAA 44
BSNT_04596___ 51 GCT-----TCTCGT---------TTCCTTTCTGTCGATCCTCATCATACC 86
||| ||||.| |||.|||.||||.| ||||
BPUM_2787 45 GCTCGTACTCTCTTTCTTATTTATTCTTTTATGTCCA-----ATCA---- 85
BSNT_04596___ 87 GGTTGTTATATTGGCGATCTTTGCCTATCAATCGGCTAGCAGCTCACTCG 136
||.|.|||||..|||.|.|.|||||..||||.||.|..| ||..
BPUM_2787 86 -----TTGTGTTGGCATTCTCTTCATATCATACGGCGAGTACTT--CTTT 128
BSNT_04596___ 137 ACA-GA-CAGATGATGGGGAGCGCATTGGAAAATGT---ACAGCAATTAA 181
|.| || ||.||.|||...||.|||..||||||||| ||||| ||.
BPUM_2787 129 AAATGATCAAATCATGCAAAGTGCAAAGGAAAATGTCGAACAGC---TAG 175
BSNT_04596___ 182 ACGAAATCATTAACACCAGCATCG------GCGAAAAAGAAAACAG---- 221
||.|||..|||| || |.||||..||||||||
BPUM_2787 176 ACAAAAATATTA----------CGAAGGTTGTGAAAGTGAAAACAGACGC 215
BSNT_04596___ 222 TGCTGATTATTTCAGCGAATGGCTGACAAAAGAGAAATA---CAATGCAA 268
.||.||||..||.|||.|||||.|.|| .||||||.| .|| ||||
BPUM_2787 216 AGCCGATTTCTTTAGCAAATGGATCAC---GGAGAAAAAGCTTAA-GCAA 261
BSNT_04596___ 269 AAAG------CA---ATGCAA----GCATTGCAGAGAAATTCTCACAATA 305
|||| || ||.||| ||.|| |||.|.|||
BPUM_2787 262 AAAGGCACAACAGATATTCAAGGGCGCTTT---GAGCAGTTC-------- 300
BSNT_04596___ 306 TATCAGCATTAACAAGGATGTAGAATCCATTT------ATACAAGTGACA 349
||.||.||.||..|.||...||||...|||| .|.|||||||..
BPUM_2787 301 -ATGAGTATGAATGATGACACAGAAGGTATTTTTGTCGCTTCAAGTGATG 349
BSNT_04596___ 350 CAAAAGGGCACTTTACCCGCTATCCGGATCTTCC-----GATGCCAAGTG 394
..||||.| |||.|..|.|||| ||..| .|||||...||
BPUM_2787 350 GCAAAGTG---TTTTCGAGATATC-----CTAACAAAAAAATGCCTGCTG 391
BSNT_04596___ 395 GCTAT-----AATCCGGTTGAACGCGACTGGTACAAAAAAGCGGTT--GC 437
.|||| || || ||.||.||.|||||.|||.| |||.| ||
BPUM_2787 392 ACTATGTCGCAA--CG---GAGCGGGATTGGTATAAAGA--CGGCTGGGC 434
BSNT_04596___ 438 AAATAAAGGGAAA---GTCGTGATCACAG-ACCCTTATAAAACCGCGTCG 483
.|| |||.|||.| ||| || |..||| |||| |||..|||.||.||.
BPUM_2787 435 GAA-AAATGGAGAGCTGTC-TG-TTTCAGCACCC-TATCCAACAGCTTCT 480
BSNT_04596___ 484 ACAAATACGATGGTTGTGACAATCGCCCAGCAGACAAAAGATGGTTCAGG 533
|||..||||.|.||.||.||.|||.|..|..||..|.|.||.||.|||||
BPUM_2787 481 ACAGGTACGCTTGTCGTCACCATCTCTAAAAAGTTAGAGGACGGATCAGG 530
BSNT_04596___ 534 CGTTATCGCAATCAACAT-GACGATTGAAAATCTGCTGAAAACAACCAAA 582
.||.||.|||||.|||.| ||| ||||..|||||..| ||||.||.| ||
BPUM_2787 531 AGTCATTGCAATGAACCTAGAC-ATTGCGAATCTAGT-AAAAGAATC-AA 577
BSNT_04596___ 583 AAAG--TCAACATCGGCACACAAGGCTACGCATTTATCATGACGAAGGAC 630
|.|| |.|||||.||.|.|||||||||.||.|||||| .||||..|
BPUM_2787 578 ATAGCATAAACATTGGGAAACAAGGCTATGCCTTTATC----GGAAGTCC 623
BSNT_04596___ 631 AAA----AAAGTTGTCGCACACCCGAATGAAAAATCAGGAACTGAATTAA 676
|.| |...||||.||.||.||.|...|||||.|.|||||..|||||.
BPUM_2787 624 AGATCGCACCTTTGTGGCCCATCCTACGAAAAAAGCTGGAACAAAATTAT 673
BSNT_04596___ 677 AAGGCGACTGGCTCGATAAGATGTTGAGTGCT----------GATAAAGG 716
..||.||.|||||.||.|| ||| |||.||||
BPUM_2787 674 CTGGTGAATGGCTAGAAAA----------GCTTTATTCACAAGATGAAGG 713
BSNT_04596___ 717 CGATTTTCAA-----TACACCATGGATGGCGATAAGAAAA--AAATGGCC 759
|||.| ||.|...|.||.| ||.||||||| ||||||..
BPUM_2787 714 -----TTCTATGAGTTATATGTTTGAAG--GAAAAGAAAAGCAAATGGAA 756
BSNT_04596___ 760 TTTGACACAAACAAGTTGACGGGATGGAAGATCGGCGGCACCATGTATTT 809
||...|||||||||...||||||.|||||.||.|.|||.||.||||.|.|
BPUM_2787 757 TTCACCACAAACAAAGCGACGGGCTGGAAAATTGTCGGTACGATGTTTGT 806
BSNT_04596___ 810 GGATGAAATCCATGAGGCAGCCCAGCCTGTCCTTCACCT---TGCTTTAA 856
|...|||.|..|.||.||.||.|||||.|||.||.||.| .|||.|.|
BPUM_2787 807 GACAGAAGTGGAAGAAGCTGCACAGCCAGTCTTTAACATGGCCGCTATCA 856
BSNT_04596___ 857 TTGTCTTGGCCGCAGCTATTATCAT---AGGGATT---ATCGTCATGACT 900
|| ||.||.|..||..|.||||| .|||||| |||.||
BPUM_2787 857 TT---TTAGCTGGCGCGCTCATCATTGGTGGGATTCTAATCTTC------ 897
BSNT_04596___ 901 TTGATCATTCGGTCGATTACAACACCGCT---GAAACAGCTTGTCGGTTC 947
|||||.||.||.||.|||||||.|||.|| .|.| |||||...|||
BPUM_2787 898 TTGATTATCCGTTCCATTACAAAACCACTTTCTATA---CTTGTTTCTTC 944
BSNT_04596___ 948 CTCTAAGCGGATCAGCGAGGGAGATTTGACGGAAACCATTGATATCCGTT 997
.||.|||..||||||.|||||||||||.||.||||..||||||.|||..|
BPUM_2787 945 TTCAAAGAAGATCAGTGAGGGAGATTTAACAGAAAAAATTGATGTCCAGT 994
BSNT_04596___ 998 CAAAAGATGA-ATTGGGCGAGCTTGGCAAAAGCTTTAACAATATGGCTTC 1046
|||||||||| |||||.| ||||.||||.|||||||||..|.|||..|..
BPUM_2787 995 CAAAAGATGAGATTGGAC-AGCTAGGCACAAGCTTTAATGAGATGAGTGA 1043
BSNT_04596___ 1047 GTCACTTCGTTCTCTCATACACGC----CATCCAGGATTCCGTAGATAAT 1092
||||.|..|...|.||||.||.|| ||..|| ||.|||||.|||
BPUM_2787 1044 GTCATTAAGAGATGTCATCCAAGCAGTACAAACA----TCTGTAGAAAAT 1089
BSNT_04596___ 1093 GTTGCCGCTTCCTCTGAGGAGCTCACTGCATCAGCTGCGCAAACGAGCAA 1142
||.||..||||.|||||.||.||.||.|||...||.|..|||||||..||
BPUM_2787 1090 GTGGCTTCTTCATCTGAAGAACTGACGGCAAGCGCAGGTCAAACGACAAA 1139
BSNT_04596___ 1143 GGCAACAGAGCACATTACATTGGCGATTGAACAATTTTCT--AACGGCAA 1190
.|||||.||.||.|||||||...|.||||| ||.||||| ||||||||
BPUM_2787 1140 AGCAACCGAACATATTACATCATCTATTGA--AACTTTCTCAAACGGCAA 1187
BSNT_04596___ 1191 TGAAAAACAAAACGAAAACATTGAAACG-GCAGCAGA-----GCACATTT 1234
||||||.||||.||||| || | |.||||.| ||.|||||
BPUM_2787 1188 TGAAAATCAAAGCGAAA----TG----GTGGAGCAAAGTGCGGCTCATTT 1229
BSNT_04596___ 1235 --ATCAAATGAATGACGGGTTG-ACGAATATGGCTCAAGCTTCTGAAGTG 1281
|.|||||||||||.||..|| ||||| .|.||..||.|.|||||.||.
BPUM_2787 1230 AAAACAAATGAATGAAGGACTGAACGAA-GTCGCAGAAACATCTGATGTC 1278
BSNT_04596___ 1282 ATCACTGATTCATCTGTTCAATCGACAGAAATTGCAAGT----GA---AG 1324
|||||.|..|||||..||||||| .|||| .||| || ||
BPUM_2787 1279 ATCACAGCGTCATCGATTCAATC--AAGAA-----CAGTCGCCGAATCAG 1321
BSNT_04596___ 1325 GCGGCAAGCTTGTTCATCAAACCATCGGCCAAATGAATGTC-ATTGACAA 1373
||||..|||||||..|.||||||.|.|||||.||||| |.| ||.|||.|
BPUM_2787 1322 GCGGACAGCTTGTGGAGCAAACCGTTGGCCAGATGAA-GACGATCGACCA 1370
BSNT_04596___ 1374 GTCCGTTAAAGAAGC----GGAG----CAAGTCGTACGCGGATTGGAAAC 1415
.||.||.|||||||| |||| ||| ||||.|.|||..
BPUM_2787 1371 TTCAGTGAAAGAAGCTGAAGGAGTAATCAA--------CGGACTAGAACA 1412
BSNT_04596___ 1416 GAAATCGAAAGATATTACAAACATTTTGCGTGTGATCAACGGCATCGCAG 1465
.|||||.|||||.||.||||||||..|..|.||.||.||||||||.||.|
BPUM_2787 1413 TAAATCAAAAGACATCACAAACATCCTAGGCGTAATTAACGGCATTGCGG 1462
BSNT_04596___ 1466 ACCAGACGAACCTGCTTGCCTTAAACGCAGCAATTGAAGCAGCGCGCGCA 1515
|.||.|||||..|.|||||..|.||.|||||.|||||||||||.||.|||
BPUM_2787 1463 ATCAAACGAATTTACTTGCACTCAATGCAGCCATTGAAGCAGCACGTGCA 1512
BSNT_04596___ 1516 GGCGAGTACGGCCGCGGCTTCTCCGTTGTAGCGGAAGAAGTAAGAAAACT 1565
||.||||..|||.|.||.|||||.|||||.||.||.|||||..|||||||
BPUM_2787 1513 GGTGAGTCAGGCAGAGGATTCTCTGTTGTTGCAGAGGAAGTGCGAAAACT 1562
BSNT_04596___ 1566 GGCAGTACAGTCAGCAGATTCAGCAAAAGAGATTGAAGGATTAATCATCG 1615
.|||||.||.|||.||||||||||||||||||||||| ||.|
BPUM_2787 1563 TGCAGTTCAATCATCAGATTCAGCAAAAGAGATTGAA-----AAGC---- 1603
BSNT_04596___ 1616 AAATTGTGAAGGAAATC--------AAT----ACATC----ACTCGGCAT 1649
|||||||.|||||| ||| ||||| |.| ||
BPUM_2787 1604 ---TTGTGAAAGAAATCGTATCTGAAATCGAAACATCTCAAAAT----AT 1646
BSNT_04596___ 1650 GTTCCAATCTGTCAATCAAGAGGTGCAGACAGGACTTGACATCACAGATA 1699
||||.||||.||.|||.||||.|||.|||..||.|||..|||.||||||.
BPUM_2787 1647 GTTCAAATCAGTAAATGAAGAAGTGAAGAATGGTCTTTCCATTACAGATC 1696
BSNT_04596___ 1700 AAAC---AGAAATGAGCTTCAAACGCATTTCTGAAATGACGAACCAAATC 1746
|||| |||| |||||| ||..||||.|...|.|||| |
BPUM_2787 1697 AAACGAAAGAA---AGCTTC---------TCACAAATTAATCAGCAAA-C 1733
BSNT_04596___ 1747 GCCGGCGA--ACTGCAA-----AAT---ATGAGTGCGACGGTTCAGC-AG 1785
..|||.|| .||.||| ||| ||||.|.|.||.||.| || ||
BPUM_2787 1734 AGCGGAGATCGCTACAAGAATTAATGACATGAATACAACAGTAC-GCGAG 1782
BSNT_04596___ 1786 CTTTCTGCCAGCTCCGAAGAAGTTTCGGGAGCGTCTGAGCACATT----- 1830
||||| |.|| ||| ||||||||.|||
BPUM_2787 1783 CTTTC------------AAAA------GGA---TCTGAGCAAATTTCAAA 1811
BSNT_04596___ 1831 -GCATCGA---------------TTTCAAAAGAAAGTTCAGC--GCATAT 1862
|||..|| |.|||..|||||||||||| || ||
BPUM_2787 1812 AGCAGTGAATGAAATTGCAGATGTATCACGAGAAAGTTCAGCAAGC--AT 1859
BSNT_04596___ 1863 ACAAGATATCGCGGCGTCAGCCGAAGAGCAGCTTGCTTCCATGGAAGAAA 1912
.|||||||||||.||.||.||.|||||||||||||||||.||||||||.|
BPUM_2787 1860 CCAAGATATCGCTGCATCTGCTGAAGAGCAGCTTGCTTCTATGGAAGAGA 1909
BSNT_04596___ 1913 TCAGCTCGTCTGCAGAGACCCTTTCGTCTATGGCGGAAGAGCTTCGCGAT 1962
|.||.||.|||.|...|||.|||||....|||||||||||..|.||.|||
BPUM_2787 1910 TTAGTTCTTCTTCTACGACTCTTTCCCAAATGGCGGAAGAATTACGTGAT 1959
BSNT_04596___ 1963 ATGACCAAACGATTCAAAAT---CGAATAA 1989
.|.|..|||...|||||.|| |||||||
BPUM_2787 1960 TTAATTAAAAAGTTCAAGATCAACGAATAA 1989
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.