Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04583 and BPUM_2785
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:13
# Commandline: needle
# -asequence dna-align/BSNT_04583___yulF.1.24716.seq
# -bsequence dna-align/BPUM_2785.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04583___yulF-BPUM_2785.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04583___yulF-BPUM_2785.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04583___yulF
# 2: BPUM_2785
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1103
# Identity: 653/1103 (59.2%)
# Similarity: 653/1103 (59.2%)
# Gaps: 235/1103 (21.3%)
# Score: 1661.0
#
#
#=======================================
BSNT_04583___ 1 GTGATACGTTTTGCAATAATAGGAACCAACTGGATTACAGACCGCTTTCT 50
.||||.||.|||||..|.||.|||||.||||||||||||||.|| .||||
BPUM_2785 1 ATGATTCGATTTGCTGTCATCGGAACGAACTGGATTACAGATCG-ATTCT 49
BSNT_04583___ 51 T--------------GAGTCAGCAGCGGATATCGAAGATTTTCAGCTG-A 85
| |||| |||.||| |||.|| || |
BPUM_2785 50 TACAGGCCGGTGAAGGAGT----AGCTGAT--------TTTACA--TGTA 85
BSNT_04583___ 86 CTGCTGTTTATTCAAGATCGGCTG-AACGCGCTGGCGAG--TTTGCTGCT 132
|.||.||.||||||.|.||.|||| ||.|.|| |.|| |||||.|..
BPUM_2785 86 CAGCCGTCTATTCACGGTCCGCTGAAAAGGGC---CAAGCATTTGCCGAA 132
BSNT_04583___ 133 AAACAC---AACGCTGC-GCATGCCTTCTCA-GACCTT-CAGGAAATGGC 176
|||.|| |.||.|.| | ||.|.| ||.||| ||.||||||||
BPUM_2785 133 AAATACGGTATCGGTACAG------TTTTTACGAACTTACATGAAATGGC 176
BSNT_04583___ 177 GGCGAGCGATTGC-TTTGATGCCGTATACATAGCGAGCCCGAACGCTCTT 225
||..||.|| ||| ||||||||.||.||.||.||||||||.||.||.|||
BPUM_2785 177 GGAAAGTGA-TGCGTTTGATGCTGTGTATATTGCGAGCCCAAATGCCCTT 225
BSNT_04583___ 226 CACAAGGAACAAGCCGTTCTCTTTATGAACCATGGCAAGCATGTGCTTTG 275
||.|||||.||.||..||.|..|.|||.|.|||...||.|||||..|.||
BPUM_2785 226 CATAAGGAGCAGGCTATTTTGATGATGGAACATCAAAAACATGTTTTATG 275
BSNT_04583___ 276 TGAGAAGCCGTTTGCTTCGAATAC--AAAAGAAACAGAAGAGATGATCTC 323
.||.||.||.|||||.|| |.|| |||||||...|||||||||||
BPUM_2785 276 CGAAAAACCATTTGCCTC--ACACCGAAAAGAAGTGGAAGAGATGAT--- 320
BSNT_04583___ 324 AGCGGCTAAGGC----AAACGGC--GT-TGTTCTCATGGAAGCAATGAAG 366
.||||..|| ||||..| || |||| |.||||||||.|||||.
BPUM_2785 321 ---TGCTACAGCAAAAAAACATCAAGTGTGTT-TGATGGAAGCGATGAAA 366
BSNT_04583___ 367 ACCACTTTCCTGCCGAA----TTTCAAAGAGCTGAAAAAACACCTGCATA 412
||.||.||.|||||.|| .|||||| |.|||.|.||.||..||.
BPUM_2785 367 ACGACATTTCTGCCCAACTTCCTTCAAA----TCAAACAGCATCTTGATC 412
BSNT_04583___ 413 AAATCGGCACTGTCCGCAGATTTACCGCAAG----------CTACTGCCA 452
|..|||| || || ||| |.||||| .|||||..|
BPUM_2785 413 AGCTCGG-AC---CC----ATT--CGGCAAGTGGTTGCTCATTACTGTAA 452
BSNT_04583___ 453 GTATTCCTCACGATATGACGCGT-TCAGAAGCGGAACTG------TTTTG 495
.|||||||||.||||.||.||.| || |||.|| ||...
BPUM_2785 453 ATATTCCTCAAGATACGATGCCTATC-------GAAATGGTGAGATTCCA 495
BSNT_04583___ 496 AATGCGTTTCAGCCTGAGCTTTCCAATGGGTCATTAATGGATATTGGCGT 545
|||||.|||.|||||||..|.||||||||.||.|||||||||||.||.||
BPUM_2785 496 AATGCTTTTAAGCCTGAATTGTCCAATGGTTCTTTAATGGATATCGGTGT 545
BSNT_04583___ 546 CTATTGTATTTATCCGGCTGTTGT-GTTGTTTGGCGCGCCGAAGGATGTA 594
.|||....|.||.||.| ||.|.| .||.|||||...|||||| |.
BPUM_2785 546 GTATCTCGTCTACCCAG-TGATCTATTTATTTGGTCTGCCGAA-----TC 589
BSNT_04583___ 595 AAA-----GCAAACGG--ATATGCTTTATCCTCCGGAGTGGACGGAGA-A 636
||| ||.|..|| |.|.|||| ||.||.||.||.||.|| || .
BPUM_2785 590 AAATCATCGCCAGAGGCTACAAGCTT--TCTTCTGGTGTAGATGG-GAGC 636
BSNT_04583___ 637 GGAACTGTCATTCTGTCTTACGACGGG-TTCGAAGCTGTTCTGATGCATT 685
||..||||..||.||...||.|||||| .|| ||||..|.||..|.||||
BPUM_2785 637 GGCTCTGTTCTTATGCAATATGACGGGCATC-AAGCACTCCTTTTTCATT 685
BSNT_04583___ 686 CCAAAATCTCTACTTC----CTATGCCCCGGCTGAAATCCAGGGTGAAGA 731
|.|||||.||.||.|| .||| |.||||||||.||.||.||.||
BPUM_2785 686 CTAAAATTTCAACGTCTCATTTAT----CTGCTGAAATTCAAGGAGAGGA 731
BSNT_04583___ 732 CGGGACGATTGTAATCGATACGATT-CACCGGCCTGAACGTGTTGAA--- 777
.|.||||||.||.||.||| |.||| |||||.||| |.|.|
BPUM_2785 732 TGCGACGATGGTGATTGAT-CAATTCCACCGTCCT-------TCGCATAT 773
BSNT_04583___ 778 ----ATCCGCTACCGGGACGG--------CCGCCTTGAAAACATCGCGAT 815
||||...|.|||.|.|| ||| |||||.| |
BPUM_2785 774 CACGATCCATGATCGGCAAGGACATCATACCG--------ACATCTC--T 813
BSNT_04583___ 816 CCC-----TGATCCTAAACCAGCGATGTTCTATGAAGCAGAAGAATTTGT 860
|.| ||||| |.||||||||||..||||| |||.|||
BPUM_2785 814 CTCAAAGATGATC---AGCCAGCGATGTATTATGA--------AATCTGT 852
BSNT_04583___ 861 CACGCTCATAA-----------AAGAGAATAAG-CTGGAATCTGAAGAAA 898
||...|..|.| ||| ||||.|| | |.|||...|..|
BPUM_2785 853 CATTTTATTGAGTGTATTCAGCAAG-GAATGAGTC---AGTCTCCGGTCA 898
BSNT_04583___ 899 ATACATTTGAACGGTCTTTG-----ACCA---CCGCAAAGATTATGGAAG 940
||||||||| |..|.|.|| |||| |.| |.|||||.|
BPUM_2785 899 ATACATTTG--CCTTATCTGTTCAAACCATGTCTG------TCATGGATG 940
BSNT_04583___ 941 AAGCAAGAAAGCAAATGG------GGATTGTATACCCTGCTGATCAAGCT 984
|.||.|||||.||||||| ||.|| |||.|.||| ||.|
BPUM_2785 941 AGGCGAGAAAACAAATGGGCGTGAGGTTT------CCTACCGAT--AGAT 982
BSNT_04583___ 985 TAA 987
.|
BPUM_2785 983 AA- 984
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