Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04581 and BPUM_2782

See Amino acid alignment / Visit BSNT_04581 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:12
# Commandline: needle
#    -asequence dna-align/BSNT_04581___uppP.1.24716.seq
#    -bsequence dna-align/BPUM_2782___uppP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04581___uppP-BPUM_2782___uppP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04581___uppP-BPUM_2782___uppP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04581___uppP
# 2: BPUM_2782___uppP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 906
# Identity:     603/906 (66.6%)
# Similarity:   603/906 (66.6%)
# Gaps:         102/906 (11.3%)
# Score: 2049.5
# 
#
#=======================================

BSNT_04581___      1 ---------------------------------------------ATGAC      5
                                                                  ||||.
BPUM_2782___u      1 ATGGTTGACCTGTTCAAAAGATCAGAATTGAAAGGAAAGAAAATCATGAA     50

BSNT_04581___      6 TCTATGGGAATTGTTTGTAGCCGCCA----TTTTAGGAATCGTAGAAGGA     51
                     |||||||||.||.||.||    |.||    ||||||||||.||.||||||
BPUM_2782___u     51 TCTATGGGATTTATTCGT----GGCACTGGTTTTAGGAATTGTCGAAGGA     96

BSNT_04581___     52 TTAACAGAGTACGCGCCGGTTTCTTCGACAGGACATATGATTATAGTAGA    101
                     |||||||||||.||.||.||.||.||.|||||.||.|||||.||.||.||
BPUM_2782___u     97 TTAACAGAGTATGCACCTGTCTCATCTACAGGTCACATGATCATTGTCGA    146

BSNT_04581___    102 CGACATCTGGCTTAAATCAA--GTAATC-TGATGTCAGAAGAAGCTGCTA    148
                     .||..|.|||.|.|||||||  |.|||| |.|.|.|   |||.||.||.|
BPUM_2782___u    147 TGATCTATGGTTAAAATCAAAGGAAATCATTACGCC---AGAGGCGGCAA    193

BSNT_04581___    149 ACTCATTCAAGGTGGTTATTCAGCTAGGCTCCATTTTAGCAGTAGCTATC    198
                     ||.||||.||.||.||.||||||.||||.||.||||||||.||....||.
BPUM_2782___u    194 ACACATTTAAAGTCGTGATTCAGTTAGGATCTATTTTAGCTGTCATGATT    243

BSNT_04581___    199 GTGTTTAAAGACCGAATTTTAAATTTACTGGGCTTGAAAAAAAATATTAC    248
                     |||||.||.||.||.|||||.||.||..|.|||||.||.||||||||.||
BPUM_2782___u    244 GTGTTCAAGGATCGGATTTTGAACTTGTTAGGCTTAAAGAAAAATATCAC    293

BSNT_04581___    249 ----------AAGCGACCAGGAGCAG-GGACATAAATTAAGCATTGCCCA    287
                               ||||        |||| ||.|||||..|.|.||||||.||
BPUM_2782___u    294 CGAAGAACAAAAGC--------GCAGCGGGCATAAGCTGACCATTGCTCA    335

BSNT_04581___    288 AATTGCCGTCGGACTCGTGCCTGCAGCTGTTCTCGGCTTTTTGTTTGAAG    337
                     |||.||.||.||||||||.||.||.|...||.|.||.||.||.|||||||
BPUM_2782___u    336 AATCGCAGTAGGACTCGTTCCAGCCGTCATTTTAGGATTCTTATTTGAAG    385

BSNT_04581___    338 ATTACATTGATGAATATTTATTTTCCGTTAAAACTGTGGCCATCGGTTTA    387
                     |.||.||||||.||||.||.|||..|||.|.|||.||.||..||||.||.
BPUM_2782___u    386 ACTATATTGATAAATACTTGTTTGACGTGAGAACAGTTGCTGTCGGCTTG    435

BSNT_04581___    388 ATTGCCGGGGCAATCCTCATGCTTTTTGCTGACTGGGTCAATAAACGGAA    437
                     |||...||.|||.|.||.||||||.|.|||||||||.||||||||||.||
BPUM_2782___u    436 ATTTTAGGCGCAGTGCTGATGCTTGTCGCTGACTGGATCAATAAACGTAA    485

BSNT_04581___    438 AACAGCGACAGACACACTCGACCGCATTTCCTATAAACAGGCG----ATA    483
                     |||||..|||..|.|..||||...|||..|.||.|.|||||||    |||
BPUM_2782___u    486 AACAGAAACAAGCTCTGTCGATAACATGACGTACAGACAGGCGCTTTATA    535

BSNT_04581___    484 GCCGTCGGCTTATTCCAATGTCTTGCCCTT-TGGCCGGGTTTCTCGCGTT    532
                         ||||..|.||.|||||| |||.|.|| |||||.||.|||||.||.|
BPUM_2782___u    536 ----TCGGACTGTTTCAATGT-TTGGCGTTATGGCCAGGCTTCTCTCGCT    580

BSNT_04581___    533 CTGGTTCAACCATATCCGGAGGTGTTATTCTCGGATTAAACCACCGAGCT    582
                     |.|||||.||.||..|.||.||.||||||||.||.||.||.|||||.||.
BPUM_2782___u    581 CAGGTTCGACGATCGCAGGTGGGGTTATTCTTGGTTTGAATCACCGTGCG    630

BSNT_04581___    583 GCAGCCGACTTTACGTTTATTATGGCGATGCCGATCATGATGGGAGCCAG    632
                     |||||.||||||||.|||||.||||||||||||||.|||...||.||.||
BPUM_2782___u    631 GCAGCTGACTTTACATTTATCATGGCGATGCCGATTATGGCAGGCGCAAG    680

BSNT_04581___    633 CTTTCTAAGCCTCGTGAAGCATTGGGACAGC-------TTAAGCTCGGAT    675
                     |||..|||..||.|||||..||       ||       ||||...|.||.
BPUM_2782___u    681 CTTCTTAACACTTGTGAAAAAT-------GCCGAATATTTAACAACAGAC    723

BSNT_04581___    676 CTGATGCCATTTTTCATCGTCGGCTTTATCTGTGCCTTTGTTGTCGCACT    725
                     .||.|||||||.||.|||||.||||||.|..||||.||||||||.||.||
BPUM_2782___u    724 ATGCTGCCATTCTTTATCGTGGGCTTTGTGAGTGCATTTGTTGTGGCTCT    773

BSNT_04581___    726 GTTTGTCGTCCGTTTCTTCTTAAGGCTGATTAACAAAATCAAACTTGTCC    775
                     .||.||.||.||.||||||.|||...||||.||.||||||||.||.||.|
BPUM_2782___u    774 CTTCGTTGTTCGATTCTTCCTAAAATTGATCAATAAAATCAAGCTGGTGC    823

BSNT_04581___    776 CATTTGCAATCTATCGAATTATTCTCGGTGTGATTTTACTTTTGATCATG    825
                     |.||||||||.||.|||||.||.||.||||||||||||.||.|..|..|.
BPUM_2782___u    824 CTTTTGCAATATACCGAATCATCCTAGGTGTGATTTTATTTATCCTATTC    873

BSNT_04581___    826 ATGTAA    831
                     ||||||
BPUM_2782___u    874 ATGTAA    879


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04581 and BPUM_2782

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
