Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02130 and BPUM_2770
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:33
# Commandline: needle
# -asequence dna-align/BSNT_02130___xtmB.1.24716.seq
# -bsequence dna-align/BPUM_2770___yqaT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02130___xtmB-BPUM_2770___yqaT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02130___xtmB-BPUM_2770___yqaT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02130___xtmB
# 2: BPUM_2770___yqaT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1403
# Identity: 938/1403 (66.9%)
# Similarity: 938/1403 (66.9%)
# Gaps: 190/1403 (13.5%)
# Score: 2922.5
#
#
#=======================================
BSNT_02130___ 1 ---------ATGATTGTAAAAGAAATCAACCCTCATTTCGAAGA-TTACG 40
.||||||.|||||||.||||.|||||.||.|||.| ||.|
BPUM_2770___y 1 ATGACGAAGTTGATTGAAAAAGAAGTCAATCCTCACTTTGAACACTTTC- 49
BSNT_02130___ 41 TGTTCAATTGGGAGCAGACGTACCAGTTTCTTGTCGGCGGCTACGGCTCA 90
|.|||.|||||.|.||||.||..||.|||.|.||.||||||||||||||.
BPUM_2770___y 50 TATTCGATTGGAATCAGAAGTTTCAATTTTTAGTAGGCGGCTACGGCTCC 99
BSNT_02130___ 91 TCCAAAAGCTATCATACCGCATTGAAAATCGTGCTAAAGCTGCTGAAGGA 140
||.|||||||||||.|..||.||.|||.|..|..|||||.|.|||.|.||
BPUM_2770___y 100 TCGAAAAGCTATCACATTGCGTTAAAACTTATTTTAAAGTTACTGGAAGA 149
BSNT_02130___ 141 AAAACGGACGGCCCTTGTGATCCGGGAGGTGTTCGATACCCATCGGGATT 190
|||.|||||.||.|||||.||.||.||.||.|..|||||.||.||.||.|
BPUM_2770___y 150 AAAGCGGACAGCACTTGTCATTCGAGAAGTATATGATACGCACCGCGAAT 199
BSNT_02130___ 191 CGACCTTCGCCTTGTTTCAAGAGGTGATCG-AAGAGCTCGGTCTCACAAA 239
|.|||||..|..|.||.||||| ||||| .|| ||.|||
BPUM_2770___y 200 CAACCTTTTCTCTCTTACAAGA---GATCGTCAG----CGATCT------ 236
BSNT_02130___ 240 GGCCGTGGCATC--TCTT---------------TCTTCCCCGCTGCAGCT 272
||||||| ||.| ..|||.||||| |
BPUM_2770___y 237 -----TGGCATCGATCATGTGGTGAAGTGCCGCAGTTCGCCGCT-----T 276
BSNT_02130___ 273 GC---GA--TTTCACAATGGCAGCCGGATCATGTTCAAAGGAATGGACAA 317
|| || ||||..|||||||||.|.|||.|.|||||||||.|||||||
BPUM_2770___y 277 GCCTTGACGTTTCGAAATGGCAGCAGCATCTTATTCAAAGGACTGGACAA 326
BSNT_02130___ 318 TCCGGCAAAATTAAAATCGGTTCATAACATTTC-ATTAATATGGATTGAA 366
.||.|..|||||||||||..|..|.|||||.|| ||| ||.||||||||.
BPUM_2770___y 327 GCCTGAGAAATTAAAATCAATCAACAACATCTCGATT-ATTTGGATTGAG 375
BSNT_02130___ 367 GAGTGCTCAGAGGTGAAGTATGAGGGGTTCAAGGAGTTAATCGGACGTCT 416
|||||.||||||||....|||||.||.||.||.|||.|..|.|||.|.||
BPUM_2770___y 376 GAGTGTTCAGAGGTTTCTTATGAAGGCTTTAAAGAGCTGCTGGGAAGGCT 425
BSNT_02130___ 417 TCGCCATCCTGAGC-TAAAGCTTCATATGATCTGTA-CCACCAATCCCGT 464
..|.||||| |..| ||..||||.|||||||.| || |.||||||||.||
BPUM_2770___y 426 GAGGCATCC-GTCCTTACCGCTTTATATGATGT-TATCAACCAATCCTGT 473
BSNT_02130___ 465 CGGCACCTC----CAATTGGACGTATAGGCATTTTTTTCGGGATGAAC-G 509
.|| || .|||||||||||.||.|||||.|||||.||||||| |
BPUM_2770___y 474 TGG----TCAAGATAATTGGACGTACAGACATTTCTTTCGAGATGAACAG 519
BSNT_02130___ 510 CAAGAAACGGTTTGTGCTGGATGACAGCGAA--CTT-TACGAAAAGCGGA 556
| .|||.||.|||||.||.||||| |||| ||| |||.||||.||.|
BPUM_2770___y 520 C-TGAAGCGATTTGTCCTAGATGA---CGAAACCTTATACAAAAAACGCA 565
BSNT_02130___ 557 CGATTGT----AAAGGGAGATACGTATTACCATCATTCCACCGCTAACGA 602
|..|||| || |||||||||.||.|||||.|||||.||..|.||
BPUM_2770___y 566 CCGTTGTGATCAA----AGATACGTACTATCATCACTCCACAGCGGAAGA 611
BSNT_02130___ 603 CAATCTTTTTCTCCCGGAAAGCTATCTGAAACAGCTTGACGGACTCAAAG 652
.||.||.||||||||..||||||||.||||.|||||.||.|.|||.||||
BPUM_2770___y 612 TAACCTATTTCTCCCTAAAAGCTATGTGAAGCAGCTGGATGAACTGAAAG 661
BSNT_02130___ 653 AGTATGATCCCGACCTGTACCGGATTGCCCGCAAAGGACGA-TTCGGCGT 701
|.||.|||||.|||||.||.||.|||||..| .||||.|.| ||||||.|
BPUM_2770___y 662 AATACGATCCAGACCTCTATCGAATTGCGAG-GAAGGGCTATTTCGGCAT 710
BSNT_02130___ 702 CAATGGGATCAGGGTGCTGCCGCAGTTCGAGGTACTCCCGCATAATCA-A 750
||||||.|..|.|||..|.||.||.||||||||| |..||||| .
BPUM_2770___y 711 CAATGGAACAAAGGTTTTTCCTCAATTCGAGGTA------CGAAATCATG 754
BSNT_02130___ 751 ATGAAAAAATGTA-TCGCAGCCATCAGCAAGCCA-----ATCTTTCG-TA 793
.|| ||||| |.|.|||||| .||| || |||.|.|| ||
BPUM_2770___y 755 CTG-----ATGTATTAGAAGCCAT--TCAA--CAGATGGATCGTCCGCTA 795
BSNT_02130___ 794 -------CAGGCATGGATTTTGGATTCGAGGAATCCTATAATGCCGTCGT 836
|||||||||||||||||||.|..|||||.||.|||||..||.|
BPUM_2770___y 796 AAACGAGCAGGCATGGATTTTGGATTTGTTGAATCATACAATGCGCTCAT 845
BSNT_02130___ 837 CCGGCTTGCTGTAGATCCTGAAAAAAAATACCTCTACATTTATTGGGAGT 886
.||..|.||.||.||||.|||||||||.|||.|.||.|||||.|||||.|
BPUM_2770___y 846 TCGATTAGCAGTCGATCATGAAAAAAAGTACTTATATATTTACTGGGAAT 895
BSNT_02130___ 887 ATTATCAAAAC------AAAATGACAGATG-----ACAGGACGGCTGAGG 925
||| |.||| ||| ||||||| |||| |.|.|||
BPUM_2770___y 896 ATT---ACAACCGCGGGAAA---ACAGATGATGAAACAG--CCGTTGA-- 935
BSNT_02130___ 926 AGCTGCGT----GAGTTTATTGAGACACAGGAATTGATCAAAGCCGACTC 971
|.| |||||.|||||..||.|||||.|.|||||||||||..|
BPUM_2770___y 936 -----CTTAAAAGAGTTCATTGAATCAAAGGAACTCATCAAAGCCGATGC 980
BSNT_02130___ 972 GGCTGAGCCGAAAAGCATTCAATATTTCCGCCAGCAGGGCTTTCGGATGG 1021
.||.||.||.||||.||||||.||||||||.||||..||.||||..||||
BPUM_2770___y 981 AGCCGAACCTAAAACCATTCACTATTTCCGGCAGCTTGGATTTCAAATGG 1030
BSNT_02130___ 1022 TTGGAGC-CAGAAAGTTTCCCGGCTCCAGGCTTCAATATACCAAAAAGGT 1070
|.|.||| || .|||||.|..||.||..|..|.||||||||.||||||.|
BPUM_2770___y 1031 TGGCAGCACA-TAAGTTCCAAGGTTCGCGTTTGCAATATACGAAAAAGAT 1079
BSNT_02130___ 1071 AAAACGGTTCAAAAAAATCTTCTGTTCGGATCGCTGTGAAAATGTC---- 1116
.||||||||.||.||||||.|.||.||.||| ||| ||||
BPUM_2770___y 1080 CAAACGGTTTAAGAAAATCATTTGCTCTGAT-GCT-------TGTCCGCA 1121
BSNT_02130___ 1117 ----ATCTATGAGC-TCAAGACACTTACGTATGCCAA---AGATAAAAAC 1158
||||||||.| |||| .||||.||.||| || ||||||..|.
BPUM_2770___y 1122 CACAATCTATGAACTTCAA-TCACTGACCTAT---AAGGCAGATAAGGAT 1167
BSNT_02130___ 1159 GGA-GCTCTGATTGAGGATG-AATTCACGATTGACCCGCATACGCTTTCT 1206
||| |.|..|| .||.|||| |.|||| .||.||.||||||||..|.||.
BPUM_2770___y 1168 GGACGTTTAGA-GGAAGATGCATTTCA-AATCGATCCGCATACATTATCA 1215
BSNT_02130___ 1207 GCCATTTGGTATGCGCTTGATGATTATGAGGTTGCTGATATGAAAGAGAC 1256
|||||.|||||||||||.|||||||||||.||..|.|||.|||||.||||
BPUM_2770___y 1216 GCCATCTGGTATGCGCTGGATGATTATGAAGTGACGGATTTGAAACAGAC 1265
BSNT_02130___ 1257 AGCACACA-AACGAATCCGGCCGAATCGAGAAAGGAGGAGGT-CATAA-- 1302
.|| |.|| |.||..||||.||.||..|||| |||||||| ||||.
BPUM_2770___y 1266 CGC-CTCAGAGCGTGTCCGTCCAAACAGAGA---GAGGAGGTCCATACAA 1311
BSNT_02130___ 1302 --- 1302
BPUM_2770___y 1312 TGA 1314
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