Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02131 and BPUM_2769
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:33
# Commandline: needle
# -asequence dna-align/BSNT_02131___xkdE.1.24716.seq
# -bsequence dna-align/BPUM_2769___yqbA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02131___xkdE-BPUM_2769___yqbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02131___xkdE-BPUM_2769___yqbA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02131___xkdE
# 2: BPUM_2769___yqbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1562
# Identity: 1025/1562 (65.6%)
# Similarity: 1025/1562 (65.6%)
# Gaps: 178/1562 (11.4%)
# Score: 3180.0
#
#
#=======================================
BSNT_02131___ 1 ATGCACAATCAAAC-AGTCAGAGCAACTGTATT-TAAAGCCAATGCCGCG 48
||.|||| |.|.|.|||||| .||| |.|||.||| .|..|
BPUM_2769___y 1 -------ATGAAACAATTGAAAGCAAC--GATTATGAAGGCAA--ACATG 39
BSNT_02131___ 49 GCTCCTCAGACAAAGCAAATCTATGAAGATGACTTTTCTGAGCTGT-ACG 97
.||..|||.|||||.|||||.||||.||||||.||||| ||.| |..
BPUM_2769___y 40 TCTGATCATACAAAACAAATGTATGCAGATGAATTTTC----CTATGAAA 85
BSNT_02131___ 98 GAGAGGACATTATCGCTCCGCCCTACAATATCATCGAGCTCAAAACTATT 147
.|||.||.|||.|..|.|||||.|||||.||||..||..|.||||..||.
BPUM_2769___y 86 AAGATGATATTGTGCCCCCGCCTTACAACATCAATGAATTAAAAAGCATG 135
BSNT_02131___ 148 GCCGAATACTCGACCATTCTTCAGCAATGCATTGATGCGTACAGAGTGAA 197
||.|||||.||.|||||||||||||||||.|||||||||||||.|..|||
BPUM_2769___y 136 GCAGAATATTCAACCATTCTTCAGCAATGTATTGATGCGTACAAAACGAA 185
BSNT_02131___ 198 TATTACAGGCTTTGGATTCGATGTTGAGTACACATTTGATGTCAACGCAA 247
||||..||||||||||||.|..||.||.|||.|.|||||..|.||.|||.
BPUM_2769___y 186 TATTTTAGGCTTTGGATTTGGAGTGGAATACGCCTTTGACTTTAATGCAG 235
BSNT_02131___ 248 GTGATGTCGATCAGGCAAAAAAGAAAAGAGCGGAAAAAGACTGGGCCAGA 297
..|.|||..|.|..||||||||||||...||.||||||||.|||.|.|||
BPUM_2769___y 236 AAGGTGTAAAACCAGCAAAAAAGAAAGCTGCAGAAAAAGAATGGACAAGA 285
BSNT_02131___ 298 CTCGAAGCCTTT----TATAAATGTCTTCACTTTGATGAATCAGCTGAAA 343
||.||||..||| .|||.||| .|||.||||||.||.|||||..
BPUM_2769___y 286 CTTGAAGAATTTACGAAATACATG----AACTATGATGAGTCCGCTGATG 331
BSNT_02131___ 344 TGATTTTAGGCTATGCCATCGAAGACAGAGAAAAAACAGGCAACGGATTT 393
|||||.|.|||||||.|.||||||||.||||.|||||.||.||.||.|||
BPUM_2769___y 332 TGATTCTTGGCTATGTCCTCGAAGACCGAGAGAAAACGGGAAATGGTTTT 381
BSNT_02131___ 394 ATGGAAGTGCTTCGCGACGGGGCGGGAAAACCTGCCGGCATCGAATATTT 443
.|.||.|||||..|.||.||....|||||.||.||.||.|||||.|||||
BPUM_2769___y 382 TTAGAGGTGCTGAGAGATGGACAAGGAAAGCCAGCAGGAATCGAGTATTT 431
BSNT_02131___ 444 AGATGTGAAATATATGCGTGTATGCGGAGCAGGC-----GAGCCTGTAGA 488
|||||.|....||||.||..|.| |||.|| |||||.||.||
BPUM_2769___y 432 AGATGCGCTCCATATCCGCATTT-----GCAAGCTTAGTGAGCCAGTCGA 476
BSNT_02131___ 489 GGT----TTCATTTGTATATGA-AGAAAACGGGAAAATGA----AAAGGA 529
.|| ||||.|| |.| ||||||.||..||.||| ||.|.|
BPUM_2769___y 477 TGTTGAATTCAGTT-----TCACAGAAAATGGCGAATTGAAGACAATGAA 521
BSNT_02131___ 530 TTAAAAGGCAAAAACGCTTCCGAAAATATGTGCAGATGATCAATGGAAAG 579
|..|||| |||||.|||||.||||||||||||.|||||||.|.||||
BPUM_2769___y 522 TCGAAAG----AAACGATTCCGCAAATATGTGCAGGTGATCAACGAAAAG 567
BSNT_02131___ 580 AAAGTATTTTTTAAAGAATACGGCGATCCGCGAA-----AAATG-GATAT 623
|||||.||.|||||.||.||.||.||||||||.| ||.|| ||
BPUM_2769___y 568 AAAGTCTTCTTTAAGGAGTATGGTGATCCGCGCATTTTGAACTGTGA--- 614
BSNT_02131___ 624 GCGCACAGGTGAAT---ATGTAAACACATTGGCAGAGAAGTATCAAGCAA 670
.|||||..||| |||..|.|||| .|||||..|..||..||||
BPUM_2769___y 615 ---AACAGGCAAATACGATGACACCACA---CCAGAGCCGCTTCGTGCAA 658
BSNT_02131___ 671 ATGAAGCCATTCACCTCAAAATCGGAAGCGG--CGTATACGGTGTACCCC 718
..||||..|||||..|.|||||.||.||||| ||||| ||..|.||||
BPUM_2769___y 659 CAGAAGTGATTCATTTTAAAATTGGCAGCGGTACGTAT--GGGATTCCCC 706
BSNT_02131___ 719 GCTGGATCGGCAATATTGTCAATTTATACGGAGCCCGAAAAGCAGAAGAA 768
|||||||.|||||.||.||||||.|.||||||||.||.||.|||||.|||
BPUM_2769___y 707 GCTGGATTGGCAACATCGTCAATATGTACGGAGCACGCAAGGCAGAGGAA 756
BSNT_02131___ 769 CTCAATTTTATGTATTTTAAGCAGGGGCGTCACGTCCCCGCTGCGATTAC 818
.|.||.|.|.|.||||||||.||.|||||.||.||.||.|.|||.||.|.
BPUM_2769___y 757 TTGAACTATCTTTATTTTAAACAAGGGCGGCATGTACCAGGTGCCATCAT 806
BSNT_02131___ 819 AGTGGAAAACGGGATGCTGTCTGAAGCTTCTTACCGGGAGCTGCAGGAAT 868
.||.|||||.|||||||||||.|||.|.|||||.|.|.||||.||.||.|
BPUM_2769___y 807 TGTCGAAAATGGGATGCTGTCAGAATCCTCTTATCAGCAGCTTCAAGATT 856
BSNT_02131___ 869 ACATGAATGATCTTGAAGGCGTGGAAAACGCCCATAAATTTCTCCTGATC 918
|.|||.|.|||.|||||||....||..|.||.|||||||||||..||.|.
BPUM_2769___y 857 ATATGGACGATATTGAAGGATCTGATCATGCACATAAATTTCTATTGCTT 906
BSNT_02131___ 919 GAAGCGGAAGGAATCGCAAAAGAAAA--GGATCTCCAC-GGAGGCGAGGA 965
||||..|||||..||.|.|.|||||| || |..|| ||||..||.||
BPUM_2769___y 907 GAAGTTGAAGGTCTCCCGACAGAAAAAGGG---TTGACGGGAGAAGAAGA 953
BSNT_02131___ 966 TATTACGCCGGTTTC---CGT----GGAAA--TCAAATCCTTGGCGGAAA 1006
| ||.|| .|| |.||| |||||||..|.||.||.|
BPUM_2769___y 954 T---------GTCTCAAATGTCAAAGTAAACTTCAAATCTCTAGCCGAGA 994
BSNT_02131___ 1007 TTCTCCAAAACGACGCCTTGTTTCTTGAATACGATGAAAAAAGCAGAAAT 1056
|.||.|||.|.||.||..|.|||.|.||||||||||||||||..|||||.
BPUM_2769___y 995 TCCTGCAAGAAGATGCGCTCTTTTTAGAATACGATGAAAAAACAAGAAAC 1044
BSNT_02131___ 1057 AAGCTGCGTTCCGCGTTCCGCCTCCCGCCGCTGTATACAGGCGAGGCTCA 1106
||..|.||.||.|||||.|||||.|||||..|.||.|||||.|||.||||
BPUM_2769___y 1045 AAAATCCGCTCGGCGTTTCGCCTTCCGCCAATTTACACAGGTGAGTCTCA 1094
BSNT_02131___ 1107 GGAATACAACCGGGCGACAGCTGATACTGCTAGAAAAATTACGGAGGAGC 1156
.||.||.|||...||||||||.|||||.||..|.||||..||.||.||||
BPUM_2769___y 1095 AGACTATAACAAAGCGACAGCAGATACCGCGCGTAAAACAACAGAAGAGC 1144
BSNT_02131___ 1157 AGGTTTTTCAGCCGGAGCGAAAAACA-CTCGT-----GAATAAACTGAAC 1200
|.||.|||||||||||.|| ||| |||.| || |||||.||.
BPUM_2769___y 1145 AAGTATTTCAGCCGGAACG----ACATCTCATCACAGGA--AAACTCAAT 1188
BSNT_02131___ 1201 ACGCTGCTTT--TGCCGGAGCTGAATAT---CCATGACGTCAGGCTGACA 1245
||||| ||| |.|||||.||..|||| .||| |||.|..|...|
BPUM_2769___y 1189 ACGCT--TTTCCTACCGGATCTTGATATGTGGCAT---GTCCGTTTTCTA 1233
BSNT_02131___ 1246 TTAAAAGGACCGGACTTTCGTGATCCGCTTGAGATTGCGAAGGTGCT--C 1293
|||||.||.||.||.|||.|.||.||..|.||||||||.|||||.|| |
BPUM_2769___y 1234 TTAAATGGTCCTGATTTTAGAGACCCATTAGAGATTGCCAAGGTACTGAC 1283
BSNT_02131___ 1294 GGTCCTTTTATTACAGCAGGAGCGGTCTCGCCGAATGATTTACGCGACCT 1343
| ||.||||||..|||.||.||.||.||.||.||.|||||.|||||.||
BPUM_2769___y 1284 G--CCATTTATTCAAGCGGGGGCAGTGTCACCTAACGATTTGCGCGATCT 1331
BSNT_02131___ 1344 TGCCGGACGGGTGCTTGGCAAAACACTGGAGGAGTGGCCGGAGGACATTT 1393
.||.|||.|..|.||.||.|||||..|.|||||.|||||.|||||..|.|
BPUM_2769___y 1332 AGCAGGAAGAATTCTCGGAAAAACGTTAGAGGAATGGCCTGAGGAACTGT 1381
BSNT_02131___ 1394 ATAAACGGCCTGCAGGA--CAGGATGCGGAA--------AAGACAAACCT 1433
||.|.||.|||..||.| |.|.|| ||| ||||.||.|||
BPUM_2769___y 1382 ATCACCGACCTTTAGAAAGCCGCAT---GAAATCAGCTGAAGAAAAGCCT 1428
BSNT_02131___ 1434 GACTGCGCTCA-TGCAGG---AGTT---GAAAGAAAGCATCGAAGATATC 1476
|..||| .||.|| ||.| ||||.||
BPUM_2769___y 1429 -----CAATCAGAGCCGGACCAGCTAACGAAATAA--------------- 1458
BSNT_02131___ 1477 AAAACGTCCTGA 1488
BPUM_2769___y 1458 ------------ 1458
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