Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02138 and BPUM_2764

See Amino acid alignment / Visit BSNT_02138 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:34
# Commandline: needle
#    -asequence dna-align/BSNT_02138___xkdI.1.24716.seq
#    -bsequence dna-align/BPUM_2764___yqbI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02138___xkdI-BPUM_2764___yqbI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02138___xkdI-BPUM_2764___yqbI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02138___xkdI
# 2: BPUM_2764___yqbI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 568
# Identity:     319/568 (56.2%)
# Similarity:   319/568 (56.2%)
# Gaps:         152/568 (26.8%)
# Score: 842.0
# 
#
#=======================================

BSNT_02138___      1 ATGAAAATAGCGGGA----------------------TTGAAACAGC-TG     27
                     ||||||||.|..|||                      |.|||||||| ||
BPUM_2764___y      1 ATGAAAATTGATGGACTTGACCGGCTGCTTTCGCAGTTGGAAACAGCGTG     50

BSNT_02138___     28 AACACGGC--ATTAAAAGAAGCGGCTTCAGGCGGTTTTTCCAGACAGGCG     75
                     .|| ||||  |||||||             ||||..|.||.|||      
BPUM_2764___y     51 TAC-CGGCGGATTAAAA-------------GCGGAATATCAAGA------     80

BSNT_02138___     76 TCCCGGTGGCTTGAGGA-GTGCGGGCAAGATTTTCTGGAGATCGTCCAAT    124
                          .|||||.||||| .|| ||.|.|||..||.||||.|||.|.||..
BPUM_2764___y     81 -----TTGGCTAGAGGACATG-GGCCTAGAGCTTTTGGACATCATTCAGG    124

BSNT_02138___    125 CTGAACTCATC-AGCACACAAA--CGATTGATACAGAAAAACTGCTCAGT    171
                     .|||.||.||| ||.|   |||  |..|.|||||||.....||.||.||.
BPUM_2764___y    125 ATGAGCTAATCAAGGA---AAATGCTGTCGATACAGGCCGGCTTCTTAGC    171

BSNT_02138___    172 TCCTTTGAGAAAGGCGCAGAGGACAATCTCTGGATTGT------GCAAAG    215
                     ||||||..|.||||.|...||||.||||     |||.|      .|||| 
BPUM_2764___y    172 TCCTTTTCGCAAGGAGATAAGGAGAATC-----ATTTTCTCATATCAAA-    215

BSNT_02138___    216 CGGCGGGCTTTCGCTTGAGGTGGGGACACAGCTTGATTACGCCTCATTTC    265
                     .||.||.||..|||||||.|||||.||.||||||||.||.|||||.|.|.
BPUM_2764___y    216 AGGTGGTCTCACGCTTGAAGTGGGAACGCAGCTTGAATATGCCTCCTATG    265

BSNT_02138___    266 TTAATGACGGCCATTGGA---CGTCAAAACAAGATGTG-AGATGGGTGCC    311
                     |.||||||||.|||...|   |.|||||...||| |.| |||||||||||
BPUM_2764___y    266 TCAATGACGGACATGCTACTTCTTCAAATGGAGA-GCGAAGATGGGTGCC    314

BSNT_02138___    312 --------GGGGCGTTTTCAAGGCTCACGGTTTATTTATGATCCAGCGGC    353
                             |||.|        |||...||.|||...|||||||   ||..
BPUM_2764___y    315 TGGCAGATGGGCC--------GGCAGCCGCTTTGAATATGATC---CGAA    353

BSNT_02138___    354 TTCA---ACGGGAA-------TGGCGCTCAAGAGAAAATGGATACCGGGA    393
                     |.||   ||.||||       ||.|.|||       ||||||||...|||
BPUM_2764___y    354 TGCAAAGACAGGAATGATGCTTGCCTCTC-------AATGGATAGATGGA    396

BSNT_02138___    394 ACGGGCTACTGGGATCATG----CACTGCTTTTATATGAACAGCTGTTTG    439
                     |..||||||||||||||||    || |||||   |||||.||..||||||
BPUM_2764___y    397 AATGGCTACTGGGATCATGCTGTCA-TGCTT---TATGAGCAAATGTTTG    442

BSNT_02138___    440 AAAAATCGTTG----GAAAGC----AAACTG-------CGCCA------G    468
                     ||.|||||.||    ||||||    ||.|||       ||.||      |
BPUM_2764___y    443 AACAATCGCTGGATCGAAAGCTTCAAAGCTGGTTCGATCGACATTTTGGG    492

BSNT_02138___    469 TGGCTGAAGAAGCTGTAA    486
                     .|| |||           
BPUM_2764___y    493 AGG-TGA-----------    498


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