Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02140 and BPUM_2763
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:34
# Commandline: needle
# -asequence dna-align/BSNT_02140___xkdJ.1.24716.seq
# -bsequence dna-align/BPUM_2763___yqbJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02140___xkdJ-BPUM_2763___yqbJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02140___xkdJ-BPUM_2763___yqbJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02140___xkdJ
# 2: BPUM_2763___yqbJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 544
# Identity: 278/544 (51.1%)
# Similarity: 278/544 (51.1%)
# Gaps: 191/544 (35.1%)
# Score: 599.0
#
#
#=======================================
BSNT_02140___ 1 ATGAACAGTGAAACAGGA--TCG-----ATCATGGCGTT-TTTGTACAGC 42
.||||.||.|| ||| ||||| ||.|| |.|.||||..
BPUM_2763___y 1 -------ATGAATCAAGAAGTCGGGGCAATCAT-GCATTATATTTACACA 42
BSNT_02140___ 43 CGGTGGTCTGTTCCT------ATTTATGAACGCGAGCTT---CCTGATCA 83
|..| ||||| ||.|||||.|| .||| ||.||.|.
BPUM_2763___y 43 CACT------TTCCTGTAAAAATGTATGATCG---ACTTTTACCAGAGCG 83
BSNT_02140___ 84 CTTTCAGGTGCCGT-CGTTATACGTCCCGCC---ACCATCTGTTT----- 124
.|||||.|||||.| |||| ||.||.||||| |.|| .||.||
BPUM_2763___y 84 TTTTCAAGTGCCATCCGTT-TATGTACCGCCTGTAACA-GTGATTAGCGG 131
BSNT_02140___ 125 TCGAGGAAACAGATACGGTCTCCACATTAAAAAAAACCTACAGTCT---C 171
|| ||||||||||.||.||.||.|..|||.|.| |.||| |
BPUM_2763___y 132 TC-------CAGATACGGTATCTACGTTTATGAAATCTT--ATTCTTTGC 172
BSNT_02140___ 172 AATGTAAAACTGTTTCATCTGGACTCCGTTCAG-----GCGCTGGATGAA 216
|| ||.|||.||||||||.|||| ||||| |||| ||.|.
BPUM_2763___y 173 AA-GTGAAAGTGTTTCATATGGA-----TTCAGAAAAAGCGC---ATAAC 213
BSNT_02140___ 217 GCGGACAG-------------------GCTCGCGGATGCCATCAGAGAAG 247
|||| .|| |||.||.||| |.||
BPUM_2763___y 214 GCGG-TAGAAATCATTGTTGATGCATTGCTTGCTGAT--CGTC------- 253
BSNT_02140___ 248 CGAGAAATATGATTCCGCTGCTGAGTGAATCCGGT-GAGAAAACGGGGGA 296
|.|||||||.|.||.|||||||| |.| |||| ||.|.
BPUM_2763___y 254 ------AAATGATTCAGATGATGAGTGAA---GATGGAGA-----GGTGC 289
BSNT_02140___ 297 T--ATG-----GTTCGCATCTCCCAAATCGAGACAAGGGTAGGAGACAGG 339
| ||| ||.||||| ||| |||.|| |||.||..|
BPUM_2763___y 290 TTGATGATTATGTCCGCAT-----AAA-------AAGAGT-GGAAACTAG 326
BSNT_02140___ 340 -------------GGCGAGGCGGCCATGGTGATCAGGTGG---AGCAGCC 373
||||..||.||.||.||..|.|.|||| |||||
BPUM_2763___y 327 AATGTTAGATCAAGGCGTAGCAGCGATTGTCCTGACGTGGGATAGCAG-- 374
BSNT_02140___ 374 GATATTATTATCACA----AAACAGAAC-AGCCTGTCTTACAGGATATCG 418
|||||...||| |.||| ||| |||..|.|||..| |
BPUM_2763___y 375 ----TTATTGGTACAACCGAGACA-AACTAGCAAGCCTTGAA-------G 412
BSNT_02140___ 419 ACATGAA-----CAG-CGGGGTGA---------------AATAA 441
||||.|| ||| .||||||| |.|||
BPUM_2763___y 413 ACATCAACTTTTCAGATGGGGTGATCAAACGTGAGCAAGACTAA 456
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