Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02161 and BPUM_2747

See Amino acid alignment / Visit BSNT_02161 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:36
# Commandline: needle
#    -asequence dna-align/BSNT_02161___xkdW.1.24716.seq
#    -bsequence dna-align/BPUM_2747.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02161___xkdW-BPUM_2747.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02161___xkdW-BPUM_2747.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02161___xkdW
# 2: BPUM_2747
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 351
# Identity:     218/351 (62.1%)
# Similarity:   218/351 (62.1%)
# Gaps:          42/351 (12.0%)
# Score: 524.5
# 
#
#=======================================

BSNT_02161___      1 ATGATATTATACGACGCAATCATGTACAAATACCCTGACGCTGTGCCAAG     50
                     |||||.|||||.||.||.||.|.|||..|||||||.||.||.|..||...
BPUM_2747          1 ATGATTTTATATGAAGCCATTAAGTATCAATACCCCGATGCGGACCCGCA     50

BSNT_02161___     51 AAAGGATTTTGAGCTGCGCAATGACGGCAATGGTTCTTACATTGAAAAAT    100
                     ||||||||||||.||..|.|||||||||.|.|||||.||.||..|..|.|
BPUM_2747         51 AAAGGATTTTGAACTTAGAAATGACGGCGACGGTTCGTATATCAACGAGT    100

BSNT_02161___    101 GGAACCTGCGCT-CGCCCATCCCAACACAAAAAGAACTCGAAA-CTTGGT    148
                     ||.| .|..|.| .|||.|..|||||..|||||||| |.|||| |.||||
BPUM_2747        101 GGCA-TTTAGATGTGCCAAAGCCAACGGAAAAAGAA-TTGAAAGCATGGT    148

BSNT_02161___    149 GGGAAG-AGCTGCAAAAAAACCCGCCGTACGAGCCGCCTGATCAGGTGGA    197
                     ||||.| |.|| ||||..||.||...|||..|.||.|||..||...|.||
BPUM_2747        149 GGGAGGAATCT-CAAAGCAATCCAAGGTATCAACCACCTCTTCCACTAGA    197

BSNT_02161___    198 GCTTCTCGCTCAGGAGTTGTCGC--AGGAAAAGCTGGCA--CGTAAGCAG    243
                     ...|||.||.||  ||..||.||  |.||||||||  ||  .|.||.|||
BPUM_2747        198 TTATCTAGCACA--AGAAGTAGCCAAAGAAAAGCT--CATGAGAAAACAG    243

BSNT_02161___    244 CTTGAAGAGC----TGAACA--AAACTTTGGGAAGCGAGCT---GGCAGG    284
                     ||||||.|.|    |||.||  .|||      ||.|||.||   ||| |.
BPUM_2747        244 CTTGAACATCAATGTGAGCATCTAAC------AAACGAACTAAAGGC-GC    286

BSNT_02161___    285 T--ATTAAGCTTTCACTACTTTCTTTGAAAGGAGA---TTACTCTGAATG    329
                     |  |..|||...||    ||||..|..||||||||   ..|.||   |||
BPUM_2747        287 TAAAAAAAGAGATC----CTTTTATATAAAGGAGAGCGAGAATC---ATG    329

BSNT_02161___    330 A    330
                     |
BPUM_2747        330 A    330


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