Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00498 and BPUM_2738

See Amino acid alignment / Visit BSNT_00498 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:19
# Commandline: needle
#    -asequence dna-align/BSNT_00498.1.24716.seq
#    -bsequence dna-align/BPUM_2738.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00498-BPUM_2738.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00498-BPUM_2738.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00498
# 2: BPUM_2738
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 886
# Identity:     250/886 (28.2%)
# Similarity:   250/886 (28.2%)
# Gaps:         551/886 (62.2%)
# Score: 599.0
# 
#
#=======================================

BSNT_00498         1 ------------------------------AT-GCCTGTCCC--------     11
                                                   || |.|.||.||        
BPUM_2738          1 ATGGCTGAAAAAATTGGATTGCAAACTCTTATAGACCGTTCCATTAGAAA     50

BSNT_00498        12 -CTCGGATC-----TTCATCCGATTGTGAAGCAGAATGCCGATGCA----     51
                      .|.||.||     ||||...||||||.||  ||||.||    |||    
BPUM_2738         51 TATGGGTTCCGGCATTCACAAGATTGTAAA--AGAAAGC----GCAATTG     94

BSNT_00498        52 -----CTCAAAGCCGCTGC-AGCGAATA-----AAGGCATTACCGTCGT-     89
                          .|||||       | |||  |||     ||||   ||.|.|.|| 
BPUM_2738         95 AAATGATCAAA-------CAAGC--ATACAAAGAAGG---TATCTTTGTT    132

BSNT_00498        90 --CATTACTGAAGGATTTAGGTCCTTTAAGGAACAAGATGAATTATATAA    137
                       .||||||...||.|...|.||.|||...||||||.||.|..|.||...
BPUM_2738        133 CAGATTACTTCTGGCTACCGTTCGTTTGCAGAACAAAATAAGCTTTACGC    182

BSNT_00498       138 ACAGGGACGTACAAAAAAA-------GGGAATATTGTCACCTATGCAAGA    180
                     .||.||.|||||              |||||.|||||||||.|.||.|.|
BPUM_2738        183 TCAAGGTCGTAC-------CGCTCCTGGGAAGATTGTCACCAACGCTAAA    225

BSNT_00498       181 GGAGGGGAATCGTATCATAACTATGGTTTAGCGATTGATTTCGCCCTTCA    230
                     ||.||..||||..||||.||||||||||||||||||||||.||..||   
BPUM_2738        226 GGTGGTCAATCAAATCACAACTATGGTTTAGCGATTGATTACGTGCT---    272

BSNT_00498       231 AAAAAA----GGATGGAAGCATCATATGGGATATGGAATATGACGGCAAT    276
                      |..||    ||||||||    .|.|.|.|.|.||||         ||.|
BPUM_2738        273 -ATTAAGTGCGGATGGAA----AAAAAGCGCTTTGGA---------CAGT    308

BSNT_00498       277 CAAAACG-GAAAATCAGATTGGCTGGAGGTTGTCGAG--------ATCGC    317
                       .|||| ||||       ||||        |.||||        ||||.
BPUM_2738        309 --TAACGAGAAA-------TGGC--------GCCGAGTAGCGCAAATCGG    341

BSNT_00498       318 TAAGACACTCGGTTTTGAATGGGGCGGGGATTGGAAACGATTCAAGGACT    367
                     .||..||||.||.|||...||||||||.||.|||||..|.||.|||||.|
BPUM_2738        342 GAAATCACTAGGATTTTCGTGGGGCGGAGACTGGAAGAGTTTTAAGGATT    391

BSNT_00498       368 ACCCCCACTTGGAGATGA-------------TTCCTAAC-TAG-------    396
                     ||||.|||.|.||.||||             ||  |||| .||       
BPUM_2738        392 ACCCACACCTTGAAATGATGGGCAGTTTGACTT--TAACACAGCTTCAAG    439

BSNT_00498       396 --------------------------------------------------    396
                                                                       
BPUM_2738        440 CGGGTAAACGACCTTTCTTGGTGTCATTTTTATCAAACAAAGTTTCTGAA    489

BSNT_00498       396 --------------------------------------------------    396
                                                                       
BPUM_2738        490 AAGCCAATTAAGACAAAGCCACTTGAAAAGCTATTAGAAAATGGTTCGAT    539

BSNT_00498       396 --------------------------------------------------    396
                                                                       
BPUM_2738        540 AAAATCTAAAACAAGTACATCTGAAAAGTCAGTCATCTTGCCATCTGGCA    589

BSNT_00498       396 --------------------------------------------------    396
                                                                       
BPUM_2738        590 TCTTAAAAATAACCAAGCCCTTAACAAAAGGATCACAAGTCACGGCCGTG    639

BSNT_00498       396 --------------------------------------------------    396
                                                                       
BPUM_2738        640 CAAAAAGCCTTATCCTCCCTCTATTTCTACCCAGACAAAGGGGCAAAAAA    689

BSNT_00498       396 --------------------------------------------------    396
                                                                       
BPUM_2738        690 CAACGGGATTGATGGCTATTATGGACCAAAAACGGCGAATGCGGTCAAAC    739

BSNT_00498       396 --------------------------------------------------    396
                                                                       
BPUM_2738        740 GGTTCCAGCTCATGAATGGTCTAGCGGCAGACGGTATATACGGTCCGAAG    789

BSNT_00498       396 ------------------------------------    396
                                                         
BPUM_2738        790 ACGAGGAACAAAATGGAACAATTGTTGAAAAAGTGA    825


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