Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00498 and BPUM_2738
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:19
# Commandline: needle
# -asequence dna-align/BSNT_00498.1.24716.seq
# -bsequence dna-align/BPUM_2738.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00498-BPUM_2738.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00498-BPUM_2738.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00498
# 2: BPUM_2738
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 886
# Identity: 250/886 (28.2%)
# Similarity: 250/886 (28.2%)
# Gaps: 551/886 (62.2%)
# Score: 599.0
#
#
#=======================================
BSNT_00498 1 ------------------------------AT-GCCTGTCCC-------- 11
|| |.|.||.||
BPUM_2738 1 ATGGCTGAAAAAATTGGATTGCAAACTCTTATAGACCGTTCCATTAGAAA 50
BSNT_00498 12 -CTCGGATC-----TTCATCCGATTGTGAAGCAGAATGCCGATGCA---- 51
.|.||.|| ||||...||||||.|| ||||.|| |||
BPUM_2738 51 TATGGGTTCCGGCATTCACAAGATTGTAAA--AGAAAGC----GCAATTG 94
BSNT_00498 52 -----CTCAAAGCCGCTGC-AGCGAATA-----AAGGCATTACCGTCGT- 89
.||||| | ||| ||| |||| ||.|.|.||
BPUM_2738 95 AAATGATCAAA-------CAAGC--ATACAAAGAAGG---TATCTTTGTT 132
BSNT_00498 90 --CATTACTGAAGGATTTAGGTCCTTTAAGGAACAAGATGAATTATATAA 137
.||||||...||.|...|.||.|||...||||||.||.|..|.||...
BPUM_2738 133 CAGATTACTTCTGGCTACCGTTCGTTTGCAGAACAAAATAAGCTTTACGC 182
BSNT_00498 138 ACAGGGACGTACAAAAAAA-------GGGAATATTGTCACCTATGCAAGA 180
.||.||.||||| |||||.|||||||||.|.||.|.|
BPUM_2738 183 TCAAGGTCGTAC-------CGCTCCTGGGAAGATTGTCACCAACGCTAAA 225
BSNT_00498 181 GGAGGGGAATCGTATCATAACTATGGTTTAGCGATTGATTTCGCCCTTCA 230
||.||..||||..||||.||||||||||||||||||||||.||..||
BPUM_2738 226 GGTGGTCAATCAAATCACAACTATGGTTTAGCGATTGATTACGTGCT--- 272
BSNT_00498 231 AAAAAA----GGATGGAAGCATCATATGGGATATGGAATATGACGGCAAT 276
|..|| |||||||| .|.|.|.|.|.|||| ||.|
BPUM_2738 273 -ATTAAGTGCGGATGGAA----AAAAAGCGCTTTGGA---------CAGT 308
BSNT_00498 277 CAAAACG-GAAAATCAGATTGGCTGGAGGTTGTCGAG--------ATCGC 317
.|||| |||| |||| |.|||| ||||.
BPUM_2738 309 --TAACGAGAAA-------TGGC--------GCCGAGTAGCGCAAATCGG 341
BSNT_00498 318 TAAGACACTCGGTTTTGAATGGGGCGGGGATTGGAAACGATTCAAGGACT 367
.||..||||.||.|||...||||||||.||.|||||..|.||.|||||.|
BPUM_2738 342 GAAATCACTAGGATTTTCGTGGGGCGGAGACTGGAAGAGTTTTAAGGATT 391
BSNT_00498 368 ACCCCCACTTGGAGATGA-------------TTCCTAAC-TAG------- 396
||||.|||.|.||.|||| || |||| .||
BPUM_2738 392 ACCCACACCTTGAAATGATGGGCAGTTTGACTT--TAACACAGCTTCAAG 439
BSNT_00498 396 -------------------------------------------------- 396
BPUM_2738 440 CGGGTAAACGACCTTTCTTGGTGTCATTTTTATCAAACAAAGTTTCTGAA 489
BSNT_00498 396 -------------------------------------------------- 396
BPUM_2738 490 AAGCCAATTAAGACAAAGCCACTTGAAAAGCTATTAGAAAATGGTTCGAT 539
BSNT_00498 396 -------------------------------------------------- 396
BPUM_2738 540 AAAATCTAAAACAAGTACATCTGAAAAGTCAGTCATCTTGCCATCTGGCA 589
BSNT_00498 396 -------------------------------------------------- 396
BPUM_2738 590 TCTTAAAAATAACCAAGCCCTTAACAAAAGGATCACAAGTCACGGCCGTG 639
BSNT_00498 396 -------------------------------------------------- 396
BPUM_2738 640 CAAAAAGCCTTATCCTCCCTCTATTTCTACCCAGACAAAGGGGCAAAAAA 689
BSNT_00498 396 -------------------------------------------------- 396
BPUM_2738 690 CAACGGGATTGATGGCTATTATGGACCAAAAACGGCGAATGCGGTCAAAC 739
BSNT_00498 396 -------------------------------------------------- 396
BPUM_2738 740 GGTTCCAGCTCATGAATGGTCTAGCGGCAGACGGTATATACGGTCCGAAG 789
BSNT_00498 396 ------------------------------------ 396
BPUM_2738 790 ACGAGGAACAAAATGGAACAATTGTTGAAAAAGTGA 825
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