Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04568 and BPUM_2736
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:11
# Commandline: needle
# -asequence dna-align/BSNT_04568___yuaC.1.24716.seq
# -bsequence dna-align/BPUM_2736___yuaC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04568___yuaC-BPUM_2736___yuaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04568___yuaC-BPUM_2736___yuaC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04568___yuaC
# 2: BPUM_2736___yuaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 592
# Identity: 402/592 (67.9%)
# Similarity: 402/592 (67.9%)
# Gaps: 83/592 (14.0%)
# Score: 1344.5
#
#
#=======================================
BSNT_04568___ 1 ATGGATGAAAATCCA-GAATTTGCAGCTA-------TAGAAC-------A 35
|||||||..|| ||| ||||.| .||||| |
BPUM_2736___y 1 ----ATGAAAAAGCAGGAA----CAGCCACAAGCAGAAGAACGTATTTTA 42
BSNT_04568___ 36 G--GCTCGGGATCTTGTTATTGACTCCATTGCTGAAACGATGGATCTTTA 83
| |||...|||||.||.|||||.||.||.|||||||||||||||||.||
BPUM_2736___y 43 GCTGCTAAAGATCTAGTCATTGATTCAATAGCTGAAACGATGGATCTCTA 92
BSNT_04568___ 84 CGGAATTACCCGCAGTGTCGGGATTTTATATGGGACGATGTAT----ATG 129
.||.|||||.||.||||..||.|||.|.||||||||.|||||| |||
BPUM_2736___y 93 TGGGATTACTCGAAGTGCTGGTATTCTCTATGGGACCATGTATTTAAATG 142
BSNT_04568___ 130 AGGGATGAGATGACGCTTGACGAAATGCGTGAGGAGTTGCAAATGAGCAA 179
|| ||.|||||.||.||.|||||||||||.|||.||||||||||.||
BPUM_2736___y 143 AG----GAAATGACACTGGATGAAATGCGTGAAGAGCTGCAAATGAGTAA 188
BSNT_04568___ 180 ACCAAGCATGAGCACAGGCGTCAAAAAGCTTCAAGACTTAAATGTAGTGA 229
.||.||.|||||.||.||.||||||||.||.||||||.|.|||.|.||.|
BPUM_2736___y 189 GCCTAGTATGAGTACGGGTGTCAAAAAACTGCAAGACATGAATATTGTCA 238
BSNT_04568___ 230 AAAAAACATTTCACCGGGGCATCCGTAAG----CATACATTTGTGGCTGA 275
||||.||.||||||||.|| ||| ||| ||||..|||||.|||||
BPUM_2736___y 239 AAAAGACCTTTCACCGCGG---CCG-AAGAAAACATAGCTTTGTTGCTGA 284
BSNT_04568___ 276 GAAGGATTTCTTTAAATTTTTCACAAATTTCTTTCCACCTAAATGGGAGC 325
.||.||.||.|||||.|||||||..||.||||||||.|..||||||||.|
BPUM_2736___y 285 AAAAGACTTTTTTAAGTTTTTCATGAACTTCTTTCCGCAAAAATGGGAAC 334
BSNT_04568___ 326 GGGAGGTTCAAGTGAATGTAGCAGCGATCGAGGAAGCTCAA--GCTGATT 373
|.|||||..|.||||||.||||.||.||.||.|||||.||| ||.|.||
BPUM_2736___y 335 GAGAGGTCGAGGTGAATTTAGCGGCAATTGAAGAAGCGCAAGTGCGGCTT 384
BSNT_04568___ 374 TACAAAAGGTTTTATGCAAGGAAGATCTCGAT---------GAGG---AT 411
|||.|||| ||.||.|||| |||| ||
BPUM_2736___y 385 --CAAGAGGT------------AGCTCACGATGATCAGTTGGAGGCACAT 420
BSNT_04568___ 412 ATCAAAAATGAAGCACTGCAG-TTATATGATCAGCTGGAAAGCTCTAAAG 460
||.|.|.|.|||||.|.|||| |.|| |||.|||||.||||||||.|||.
BPUM_2736___y 421 ATAAGAGAGGAAGCCCAGCAGCTCAT-TGAGCAGCTTGAAAGCTCAAAAT 469
BSNT_04568___ 461 CTTACTATGACTGGCTGAAACGGCTTGCTGAA-TCGGTGCAGACCGGAGA 509
|.||.|||||||||||||.|||..|.|| ||| ||.||.||..|.||.||
BPUM_2736___y 470 CCTATTATGACTGGCTGAGACGATTAGC-GAACTCTGTTCATTCAGGGGA 518
BSNT_04568___ 510 AATTTTTAAATTTATACCGAT-----CGAAACAAAGTAA--- 543
|||.|||.|.|.|||.||.|| .||||.||| ||
BPUM_2736___y 519 AATCTTTGACTATATCCCAATTAATCAGAAAGAAA--AATAG 558
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