Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04560 and BPUM_2732
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:05
# Commandline: needle
# -asequence dna-align/BSNT_04560___yuaF.1.24716.seq
# -bsequence dna-align/BPUM_2732___yuaF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04560___yuaF-BPUM_2732___yuaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04560___yuaF-BPUM_2732___yuaF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04560___yuaF
# 2: BPUM_2732___yuaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 624
# Identity: 349/624 (55.9%)
# Similarity: 349/624 (55.9%)
# Gaps: 141/624 (22.6%)
# Score: 910.5
#
#
#=======================================
BSNT_04560___ 1 ATGGTAACGGCGGCCGTTCATCAATGCATTGATGAAGAAAGGATGAGGAA 50
|.|||||
BPUM_2732___y 1 --------------------------------------ATGGATG----- 7
BSNT_04560___ 51 ATTGGAGTTATTTGGAGTACCTATACAAACAATTTATCTTTATACGCTTA 100
|.|||||..|.||..|.||.|| ..|||.|||||| |.||
BPUM_2732___y 8 --------TGTTTGGGCTGCCACTTCAGAC--GCTATATTTATA--CATA 45
BSNT_04560___ 101 TT----ATTGCGGGCAGCCTTACGC-TGTTATTCCTGTTTTTCGGAGATG 145
|| ||..|.||.|.|||.||.| |||| |||.|.||||||||.||||
BPUM_2732___y 46 TTGATGATATCAGGAATCCTGACACTTGTT-TTCGTCTTTTTCGGCGATG 94
BSNT_04560___ 146 TATTTGCAGGGCTGTCAGAAGGCA------TTCCGTTTCTTAATCCGACA 189
|.||||..||..|||..||||..| ||||.||.|||.|.||.|||
BPUM_2732___y 95 TGTTTGATGGATTGTTTGAAGCGATTCCTGTTCCATTCCTTCAACCAACA 144
BSNT_04560___ 190 TTAGTGCTCTCATTTTTCACATGTTTTTCAGCGGGCGGATATATAGGTGA 239
|||.|.|||.|||||.|.||.|.|||.||.||.||.||||.|||
BPUM_2732___y 145 TTAATCCTCGCATTTCTTACCTTTTTCTCGGCTGGAGGATTTAT------ 188
BSNT_04560___ 240 ACTCGTATTGCCTCTGTCAA------GCTTG-----------CTGATTGC 272
|||||..|| |.||| || |.||
BPUM_2732___y 189 -----------CTCTGAAAAAACAGCGATTGTAGGGAGTGGACT--TGGC 225
BSNT_04560___ 273 GC--TTTTATCTTGCATCCTTTCGATCATGCTGGTGGTA--------TTG 312
|| |.||||||..|.||||..| ||||||| |||
BPUM_2732___y 226 GCAGTCTTATCTGCCGTCCTCGC---------GGTGGTACTTGTGACTTG 266
BSNT_04560___ 313 CTTCACA--TCTTTGTGCTGGTGCCATTATCATCTGCAGAAGAATCATTG 360
.||.| | |||||||..|.||.||..|.||.|||||.||||||||..|.
BPUM_2732___y 267 TTTGA-ATGTCTTTGTCTTAGTCCCGCTTTCCTCTGCTGAAGAATCTCTC 315
BSNT_04560___ 361 GCATATAGAGAAGATGATCTCAGAGGAA-GACTCGGTAAAGTGATTACAG 409
.||||||..||.|..||..|.|.||||| ||||.||.|.| |.|||..|.
BPUM_2732___y 316 TCATATACGGAGGCCGACTTAAAAGGAAGGACTGGGGAGA-TCATTGTAT 364
BSNT_04560___ 410 CTGTGCCGGTTGACGGATTTGGTGAAGTG--GTCA--TAGAAGGGATAGG 455
||||.||....|||||.|||||.|||||| ||.| |||.| ||| |
BPUM_2732___y 365 CTGTTCCAAAAGACGGGTTTGGAGAAGTGCTGTTAATTAGTA---ATA-G 410
BSNT_04560___ 456 CGGGACCATTTCAAAGTCAGCGGTCAGTTTTGATAATCAGCAGAT--CAG 503
|||||..||.||||||.|.||.||||||||.||..|..||.|||| ||
BPUM_2732___y 411 CGGGAAAATCTCAAAGCCTGCTGTCAGTTTCGACGAAGAGGAGATTCCA- 459
BSNT_04560___ 504 TTACGGGACAACGGTGTTAGTCGTAGATATTAACAACGGAGTTCTT-TCG 552
||.||.||...||||.|.|||||.||..|.|||||.||.| |||| ||.
BPUM_2732___y 460 -TATGGAACCCGGGTGCTGGTCGTCGAAGTGAACAAAGGCG-TCTTATCA 507
BSNT_04560___ 553 GTTACTCCGCATGAACCCATTTAA 576
||||..||..|||||...||.||.
BPUM_2732___y 508 GTTATACCAGATGAAGAAATCTAG 531
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