Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04559 and BPUM_2731
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:04
# Commandline: needle
# -asequence dna-align/BSNT_04559___yuaG.1.24716.seq
# -bsequence dna-align/BPUM_2731.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04559___yuaG-BPUM_2731.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04559___yuaG-BPUM_2731.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04559___yuaG
# 2: BPUM_2731
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1558
# Identity: 1219/1558 (78.2%)
# Similarity: 1219/1558 (78.2%)
# Gaps: 38/1558 ( 2.4%)
# Score: 4786.5
#
#
#=======================================
BSNT_04559___ 1 ATG------ACAATGCCGATTATAATGATCATCGGAGTTGTATTCTTTT- 43
||| |||| |.|||.||||.||.||.|||.||| |.|||.|
BPUM_2731 1 ATGCCAGGAACAA---CTATTTTAATTATTATTGGAATTG--TGCTTGTG 45
BSNT_04559___ 44 -TATTAATTGCACTAATAGCTGTGTTTATTACGAAGTATCGTACAGCAGG 92
|.|||||||||||.||.|.|||.|||.||.||||.||.||.|||||.||
BPUM_2731 46 ATTTTAATTGCACTTATTGGTGTATTTGTTTCGAAATACCGGACAGCTGG 95
BSNT_04559___ 93 GCCTGATGAAGCGTTAATTGTAACGGGGAGCTATCTGGGCAATAAAAATG 142
.||.||||||||.|||||.||.||.||.||.||.||.||.|.||||||||
BPUM_2731 96 TCCAGATGAAGCATTAATCGTCACAGGAAGTTACCTCGGAAGTAAAAATG 145
BSNT_04559___ 143 TTCATGTCGATGAAGGCGGCAACCGTATTAAAATCGTCCGCGGCGGAGGA 192
|.||.|||||||||||.||.|||...|||||.||.||..|.||.|||||.
BPUM_2731 146 TCCACGTCGATGAAGGTGGAAACAAGATTAAGATTGTAAGAGGTGGAGGT 195
BSNT_04559___ 193 ACCTTTGTCCTTCCCGTCTTCCAGCAGGCAGAGCCGCTAAGCCTATTATC 242
||||||||.||.||.||.||.||.||.|||||||||||.|||.||.||||
BPUM_2731 196 ACCTTTGTACTCCCTGTTTTTCAACAAGCAGAGCCGCTCAGCTTACTATC 245
BSNT_04559___ 243 AAGCAAACTCGATGTTTCGACACCTGAAGTCTATACAGAACAAGGAGTGC 292
.|||||.||.||||||||.||.||||||||||||||.||||||||.||.|
BPUM_2731 246 TAGCAAGCTAGATGTTTCAACGCCTGAAGTCTATACTGAACAAGGTGTAC 295
BSNT_04559___ 293 CAGTAATGGCCGATGGAACTGCGATTATTAAAATCGGCGGTTCTATAGGA 342
||||.|||||.||.|||||.||.||.||||||||.||.||.||.||.|.|
BPUM_2731 296 CAGTCATGGCAGACGGAACGGCCATCATTAAAATTGGTGGATCGATTGAA 345
BSNT_04559___ 343 GAAATCGCTACAGCGGCCGAACAATTTTTAGGGAAATCAAAAGACGACCG 392
|||||.|||||.||.|||||.||.||||||||.|||.|||||||.|||||
BPUM_2731 346 GAAATTGCTACTGCTGCCGAGCAGTTTTTAGGTAAAACAAAAGAAGACCG 395
BSNT_04559___ 393 TGAGCAGGAAGCGCGGGAGGTTTTAGAAGGCCACCTTCGTTCCATTCTCG 442
.||..|.||||||.|.||.||..|||||||.||||||||.||||||.|.|
BPUM_2731 396 CGAAAACGAAGCGAGAGAAGTACTAGAAGGACACCTTCGCTCCATTTTAG 445
BSNT_04559___ 443 GCTCAATGACAGTAGAAGAAATCTATAAAAACAGAGAAAAATTCTCTCAA 492
|.|||||||||||.|||||.||.||||||||||||||.|||||.||||||
BPUM_2731 446 GGTCAATGACAGTTGAAGAGATTTATAAAAACAGAGAGAAATTTTCTCAA 495
BSNT_04559___ 493 GAGGTGCAGCGTGTCGCTTCACAGGATCTCGCGAAAATGGGGCTGGTAAT 542
||.||.||||||||||||||.||.||..|.||.||||||||.||.||.||
BPUM_2731 496 GAAGTACAGCGTGTCGCTTCTCAAGACTTAGCAAAAATGGGCCTCGTCAT 545
BSNT_04559___ 543 CGTCTCGTTTACCATTAAAGATGTTCGTGATAAAAACGGTTATCTTGAAT 592
.||.|||||||||||.||||||||.|||||||||||.||.|||.|.||||
BPUM_2731 546 TGTATCGTTTACCATCAAAGATGTCCGTGATAAAAATGGCTATTTAGAAT 595
BSNT_04559___ 593 CATTAGGGAAACCGAGAATTGCCCAAGTAAAACGCGATGCTGATATCGCA 642
||.||||.|||||.||||||||||||||.|||||||||||.|||||.||.
BPUM_2731 596 CACTAGGTAAACCAAGAATTGCCCAAGTGAAACGCGATGCAGATATTGCG 645
BSNT_04559___ 643 ACAGCAGAGGCTGATAAAGAAACCCGAATTAAGCGGGCAGAAGCCGATAA 692
||||||||.||.|||||||||||.||.||.||.||.||||||||.|||||
BPUM_2731 646 ACAGCAGAAGCAGATAAAGAAACACGTATCAAACGTGCAGAAGCAGATAA 695
BSNT_04559___ 693 AGACGCAAAAAAATCAGAACTTGAACGGGCGACGGAAATCGCTGAAGCTG 742
|||.||.||.|||||.||.|||||.||.||.||.||||||||||||||.|
BPUM_2731 696 AGATGCGAAGAAATCTGAGCTTGAGCGTGCTACTGAAATCGCTGAAGCAG 745
BSNT_04559___ 743 AAAAACTCAATCAGCTCAAAATGGCTGAATTCCGCAGAGAACAAGATACG 792
|||||.|||||.||||.||||..||.||||||.|..|.|||||||||||.
BPUM_2731 746 AAAAAATCAATGAGCTGAAAAGAGCAGAATTCAGACGTGAACAAGATACA 795
BSNT_04559___ 793 GCAAAAGCGAATGCCGACCAAGCATATGATTTAGAGACTGCCAGAGCG-- 840
||||||||.|..|||||||||||.||.|||.|.||.| |||..||
BPUM_2731 796 GCAAAAGCAAGCGCCGACCAAGCGTACGATCTTGAAA----CAGCTCGTA 841
BSNT_04559___ 841 --CGCCAGCAAGTCACAGAGCAGGAAATGCAGGTTAAAATTATCGAACGC 888
||.|||||.||.||.||.||.||||||||.||.||.||.||.|||||.
BPUM_2731 842 ATCGTCAGCACGTAACTGAACAAGAAATGCAAGTAAAGATCATTGAACGA 891
BSNT_04559___ 889 CAAAAACAAATAGAGCTAGAAGAAAAAGAAATTCTTCGCCGTGAACGTCA 938
||.||.|||||.||..|||||||||||||.||||..||.|||||.|||||
BPUM_2731 892 CAGAAGCAAATTGAATTAGAAGAAAAAGAGATTCAGCGTCGTGAGCGTCA 941
BSNT_04559___ 939 ATACGACTCAGAGGTAAAGAAAAAAGCCGATGCAGACCGTTATTCTGTTG 988
||||||.||.||.||.||.||.|||||.|||||||||||||||.||||||
BPUM_2731 942 ATACGATTCTGAAGTGAAAAAGAAAGCAGATGCAGACCGTTATGCTGTTG 991
BSNT_04559___ 989 AGCAGTCCGCAGCAGCTGAGAAAGCCAAACAGCTCGCGGAAGCCGATGCC 1038
|||||||.||.|||||.||.|||||.||||..||.||.|||||.|||||.
BPUM_2731 992 AGCAGTCAGCTGCAGCGGAAAAAGCGAAACGCCTTGCAGAAGCGGATGCT 1041
BSNT_04559___ 1039 AAGAAGTACAGTATTGAAGCAATGGCAAAGGCTGAGGCGGAAAAAGTAAG 1088
|||||.|||||.|||||||||||||||||.||.||.||.||.|||||..|
BPUM_2731 1042 AAGAAATACAGCATTGAAGCAATGGCAAAAGCAGAAGCTGAGAAAGTCCG 1091
BSNT_04559___ 1089 AATTGACGGGCTAGCAAAAGCAGAAGCGGAAAAAGCGAAAGGAGAGACAG 1138
||||||||||||.||.|||||.||||||||....||||||||.||.||.|
BPUM_2731 1092 AATTGACGGGCTTGCCAAAGCGGAAGCGGATCGTGCGAAAGGGGAAACTG 1141
BSNT_04559___ 1139 AGGCAGAGGTTATCCGCCTGAAAGGTCTTGCAGAAGCGGAAGCAAAAGAG 1188
|.||||||||.||..|.||||||||||||||.|||||.|||||.||||||
BPUM_2731 1142 AAGCAGAGGTCATTAGACTGAAAGGTCTTGCGGAAGCAGAAGCGAAAGAG 1191
BSNT_04559___ 1189 AAAATTGCGGCTGCCTTTGAACAGTACGGGCAGGCGGCGATTTTCGATAT 1238
|||||.||.|..||.|||||||||||.||.|||||.|||||..|.|||||
BPUM_2731 1192 AAAATCGCTGAAGCATTTGAACAGTATGGTCAGGCAGCGATCCTTGATAT 1241
BSNT_04559___ 1239 GATTGTCAAAATGCTTCCGGAATACGCGAAACAAGCAGCGGCGCCTCTTT 1288
|||.||.|||||||||||.|||||.|||||.||||.|.|.||.||.||||
BPUM_2731 1242 GATCGTGAAAATGCTTCCTGAATATGCGAAGCAAGTATCTGCACCACTTT 1291
BSNT_04559___ 1289 CAAATATTGATAAAATCACCGTTGTCGATACAGGAGGAAGCGGTGAATCA 1338
|.||||||||||||||.||.|||||.|||||.|||||.|.|||.|||...
BPUM_2731 1292 CTAATATTGATAAAATTACGGTTGTGGATACGGGAGGTAACGGAGAAGGT 1341
BSNT_04559___ 1339 AGCGGAGCAAACAAAGTAACCAGCTATGCGACGAACTTAATGTCAAGTCT 1388
||||||||.||.|||||.||..|||||||.||.|||.|.|||||.|||||
BPUM_2731 1342 AGCGGAGCCAATAAAGTCACTGGCTATGCTACAAACCTCATGTCCAGTCT 1391
BSNT_04559___ 1389 GCAAGAAAGTTTAAAAGCATCCTCAGGAATTGATGTAAAAGAAATGCTTG 1438
.|||||||||.|.|||||||||||.|||||||||||.||||||||..|||
BPUM_2731 1392 ACAAGAAAGTCTGAAAGCATCCTCTGGAATTGATGTCAAAGAAATTATTG 1441
BSNT_04559___ 1439 AGAACTTTTCAGGAAAAGGAAACGTAAAACAAAGCATTAATGAATTAACA 1488
||||||||||.||||||||.||.||.||.|||||||||.|.|||.||||.
BPUM_2731 1442 AGAACTTTTCCGGAAAAGGCAATGTGAAGCAAAGCATTCAGGAACTAACG 1491
BSNT_04559___ 1489 AATGAAATCAAAGAAGCCAA-----------AACGGT-----CCAAAAAT 1522
||||||||||||.|| |||| |.||.| .||||.|.
BPUM_2731 1492 AATGAAATCAAACAA-CCAAGAAAAAAAGAGATCGCTGATACTCAAATAG 1540
BSNT_04559___ 1523 CAGAGTAA 1530
.|||.|||
BPUM_2731 1541 AAGAATAA 1548
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