Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04557 and BPUM_2725
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:04
# Commandline: needle
# -asequence dna-align/BSNT_04557___yuaJ.1.24716.seq
# -bsequence dna-align/BPUM_2725.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04557___yuaJ-BPUM_2725.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04557___yuaJ-BPUM_2725.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04557___yuaJ
# 2: BPUM_2725
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 647
# Identity: 375/647 (58.0%)
# Similarity: 375/647 (58.0%)
# Gaps: 139/647 (21.5%)
# Score: 874.5
#
#
#=======================================
BSNT_04557___ 1 ATGAATCAATCTAAGCAACTGGTTCGCCTTATTGAAATTGCCATTATGAC 50
|||.|.|||||.||.|||.||||.||.||.||.|||||.||.||||||||
BPUM_2725 1 ATGCAGCAATCAAACCAATTGGTACGACTGATGGAAATCGCAATTATGAC 50
BSNT_04557___ 51 AGCGGCAGCCGTTATTTTAGACATT--GTCTCAGGAATGTTTCTTAGCAT 98
..|....||..||.|.|||| ||| .|.|||||..|.|||.|.||.||
BPUM_2725 51 TTCACTTGCACTTGTATTAG--ATTACTTATCAGGTCTCTTTTTAAGAAT 98
BSNT_04557___ 99 GCCTCAAGGAGGCTCGGTCT--CCATCATGATGATTCCGATCTTTTTAAT 146
|||..|.||.||.|| ||| |..|.||.|||||.||..||.||.|.||
BPUM_2725 99 GCCGAATGGCGGATC--TCTTGCGCTGATTATGATCCCCGTCATTCTTAT 146
BSNT_04557___ 147 TTCGTTTCGCTGGGG--TGTCAAAGCAGGT--------------CTTACT 180
.||..||.|.||||| |.|| ||.|.||| ||||.|
BPUM_2725 147 GTCTATTAGATGGGGAATATC-AACCGGGTTTATCATTGGCGTGCTTATT 195
BSNT_04557___ 181 ACAGG--TTTGTTGACAGGTCTAGTACAAATAGCAATCGGAAACTTGTTT 228
.|||| || ||| ||| |..|||.|| |.|.||.
BPUM_2725 196 GCAGGCCTT------CAG--CTA--ATGAATGGC---------CCTATTA 226
BSNT_04557___ 229 GCTCAACATCCTGTACAGCTATTGTTAGATTACATTGTCGCTTTCGCAGC 278
.|.|.||| ||.||.||...|||..|.||||| |.||| |||||.|
BPUM_2725 227 TCGCTACA-CCAGTTCAAGGATTCCTCGATTA---TTTCG---TCGCATC 269
BSNT_04557___ 279 AATCGGCA------TAAGCGG-CTGTTTCGCTTCTTCTG-TCCGTAAAGC 320
..|.|.|| ||||||| ||.||| |||...| || |....|||||
BPUM_2725 270 TGTTGTCATTTCCCTAAGCGGCCTATTT-GCTGGAT-TGATTAAAAAAGC 317
BSNT_04557___ 321 C--GCTGTATCAAAAACAAAAG--GGAA---------ATTGA-------- 349
| .|.|.|||||||.|.|||| |.|| ||| |
BPUM_2725 318 CATTCAGGATCAAAAGCGAAAGCAGCAATTCTTCTATATT-ACTTTATCC 366
BSNT_04557___ 350 ----TTGTTTCAGTGGTCAGCGCAGTTT-TTATCGGCAGTTTGCTGCGCT 394
|||||.|| ||||| || |||..||.||
BPUM_2725 367 GTATTTGTTGCA-----------AGTTTCTT-----CAGACTGTTG---- 396
BSNT_04557___ 395 ATGCCGCGCATGTC---ATTTCAGGAGCTGTGT--TTTTCGGCAGCTTTG 439
.||| || |||||.||.|.|||.| ||||| .||| |.||
BPUM_2725 397 -------ACAT-TCTTTATTTCTGGTGTTGTTTTCTTTTC-TCAG-TATG 436
BSNT_04557___ 440 CTCCAAAAGGAACACC-GGTATGGATTTATTCTTTAACTTATAA-TGCGA 487
|.|||||||||||.|| ||| |||.||||.|||||||.|||||| .|| |
BPUM_2725 437 CACCAAAAGGAACGCCAGGT-TGGGTTTACTCTTTAATTTATAACAGC-A 484
BSNT_04557___ 488 CTTACATGGTTCCTTCATTCATTATTTGTGCA--ATTGTCCTATGTTTAT 535
|.||.||||||||||||||.|||||| |||| ||.||.|| ||...
BPUM_2725 485 CATATATGGTTCCTTCATTTATTATT--TGCAGTATCGTTCT---TTGCA 529
BSNT_04557___ 536 TATTTATGACA---GCACCCCGTCTGCTTAAAAGTGACAAAGCGTAA 579
||.|.||..|| |||.|.|||.||.||.....|.|||||...|||
BPUM_2725 530 TACTCATACCAAGTGCATCTCGTTTGGTTTTTCCTCACAAAAAATAA 576
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