Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04498 and BPUM_2723

See Amino acid alignment / Visit BSNT_04498 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:04
# Commandline: needle
#    -asequence dna-align/BSNT_04498___ytaB.1.24716.seq
#    -bsequence dna-align/BPUM_2723.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04498___ytaB-BPUM_2723.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04498___ytaB-BPUM_2723.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04498___ytaB
# 2: BPUM_2723
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 510
# Identity:     319/510 (62.5%)
# Similarity:   319/510 (62.5%)
# Gaps:          75/510 (14.7%)
# Score: 896.5
# 
#
#=======================================

BSNT_04498___      1 -----ATGAAAAAG----ATTGTCGGC---GCTTTAGCCGTTTTTGTAAT     38
                          |.|||||||    ||| |.|||   |.||     |||||..|.||
BPUM_2723          1 ATGGCAAGAAAAAGTATCATT-TGGGCAGTGATT-----GTTTTCTTTAT     44

BSNT_04498___     39 TACATATGCGCTGTTTTCAGCCGCAGGCTACCTGTTTCCTGTGGACCAAG     88
                     ||||||.||..|.||.||.|..||.||.|.|||||||||..|.|||..||
BPUM_2723         45 TACATACGCATTATTCTCTGTGGCGGGATTCCTGTTTCCGATTGACAGAG     94

BSNT_04498___     89 AATGGTACAATTCATTGAAAAAACCGGACTGGACGCCAA------GCGTA    132
                     |.|||||..||.||||.||.||||||||.|||||.||||      |.|||
BPUM_2723         95 AGTGGTATGATGCATTAAATAAACCGGAATGGACACCAAGTGGTGGTGTA    144

BSNT_04498___    133 ACTGCGATCGGCATCATTTGGGCCACCCTGTTTGCCCTGATCTCCCTTTC    182
                     |.|| |..|.|     |.|||||...|.|.|||||.||.|||||..|.||
BPUM_2723        145 ATTG-GTGCTG-----TATGGGCTGTCTTATTTGCTCTCATCTCGTTGTC    188

BSNT_04498___    183 AGCAGCCATTGTATATGCTGCG----TTTTCATTTAAAGGTGCGAAAAGC    228
                     .|||||.||..|.||||    |    |.|..||||.||      ||||  
BPUM_2723        189 CGCAGCGATCATTTATG----GAAAATATGGATTTCAA------AAAA--    226

BSNT_04498___    229 TTTCGGTTTACACTTTTG-------------ATAAATTACGTGCTCAATC    265
                       ||..|||||..|||||             .|||||||.||..|.||||
BPUM_2723        227 --TCACTTTACCATTTTGGATTCTTTTTCTTTTAAATTATGTATTTAATC    274

BSNT_04498___    266 AAGCCTTCAGCTATTTCCAGTTTACGCAAAAAAATCTGCTGGCTGCATCG    315
                     |||||||.||.|.|||.||.|||||.||||||.||.|..|.||.||..||
BPUM_2723        275 AAGCCTTTAGTTTTTTTCAATTTACACAAAAAGATTTATTTGCCGCTACG    324

BSNT_04498___    316 CTTGACTGCCTGCTTGTCGCCATCACAGCAATCG-TATTACTGATCAT-T    363
                     .||||.||||||||||||||..|.||||||.|.| |||| .|||||.| |
BPUM_2723        325 ATTGATTGCCTGCTTGTCGCACTGACAGCACTTGCTATT-GTGATCGTCT    373

BSNT_04498___    364 GCCAAAAAATACAACAGAGCCG---CAAGCTATCTT-CTTTTGCCTTATT    409
                     ..|..|||.|| |.||.||.||   ||    ||.|| ||..|.||||||.
BPUM_2723        374 CGCGTAAACTA-AGCAAAGTCGTTCCA----ATTTTACTCATTCCTTATG    418

BSNT_04498___    410 ATTTATGGAG-TGCATTTGCGACGTTCTTATCCTTTACAATCAATTCAAT    458
                     ..||||||.| |.| |||||.||.|.|||.||.|.|||.|||.||||.||
BPUM_2723        419 TGTTATGGGGATTC-TTTGCAACTTACTTGTCTTATACGATCTATTCCAT    467

BSNT_04498___    459 GAATCTGTGA    468
                     |||..|||.|
BPUM_2723        468 GAACATGTAA    477


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