Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04488 and BPUM_2722
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:03
# Commandline: needle
# -asequence dna-align/BSNT_04488___yteA.1.24716.seq
# -bsequence dna-align/BPUM_2722___dksA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04488___yteA-BPUM_2722___dksA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04488___yteA-BPUM_2722___dksA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04488___yteA
# 2: BPUM_2722___dksA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 850
# Identity: 454/850 (53.4%)
# Similarity: 454/850 (53.4%)
# Gaps: 248/850 (29.2%)
# Score: 1166.0
#
#
#=======================================
BSNT_04488___ 1 TTG-CTTACGAAAGAACAGCTTCAGCATTT-------------------- 29
||| || |||||..|..|.||.|||||
BPUM_2722___d 1 TTGTCT----AAAGACGAATTACATCATTTGAAGCAGCGACTTCTCGATG 46
BSNT_04488___ 30 -AAAAAATGAACTGGAACAAACGAAAAAAGATATCTTAAACCGTTTCAAA 78
|||..|||||||.||| |..||||| |.|.
BPUM_2722___d 47 AAAAGCATGAACTCGAA-----GCCAAAAG----------------CCAT 75
BSNT_04488___ 79 GACAATGATCATTTTCAGCTTAACTCAGCATTTCCTTATGATTCGTG-GG 127
|||.||||.|| .||...|.|||||||||||||||| || .|
BPUM_2722___d 76 GACGATGAACA---------AAAAGTATCATTTCCTTATGATTC-TGTCG 115
BSNT_04488___ 128 GTGAGCTTTCGGCATACGACAACCATCCCGGCGATCAGGCGACAGAACTT 177
|.||.||.||.||.||.||.||.||.||.||.|||||.|.|||||||||.
BPUM_2722___d 116 GAGATCTGTCAGCCTATGATAATCACCCAGGTGATCAAGGGACAGAACTG 165
BSNT_04488___ 178 TACGAGCGTGAGAAAGACATCGCTCTAGACTTGCATGAGCGAGAGCACCT 227
|.|||.||.|.||||||.||.||..||.|| || |
BPUM_2722___d 166 TTCGAACGCGGGAAAGATATTGCATTAAAC-------------AG----T 198
BSNT_04488___ 228 TCGGGACATTGAGCAT----------TCATTGAAG--------GCGATAG 259
|.||.||| |||.||| |||.||||| ||.||..
BPUM_2722___d 199 TTGGAACA-TGAACATCTGTTAGACATCAATGAAGCACTTCAAGCCATCA 247
BSNT_04488___ 260 AAAACGGTACGTATGGC---------ATTTGTGAAGTC---AGCGGAAAG 297
.|.||||..|.|||||| .|.|||.|||.| |.|..||||
BPUM_2722___d 248 CAGACGGCTCTTATGGCCAGTGCAAGGTCTGTAAAGCCCCTATCCCAAAG 297
BSNT_04488___ 298 GAAATCCCGTTCGAACGACTTGAAGCGCTT-CCGACTGC---CACAACCC 343
||| |||| |.||||| ||| ||.|.||| ||||
BPUM_2722___d 298 GAA----CGTT--------TAGAAGC-CTTGCCTAGTGCCGTCACA---- 330
BSNT_04488___ 344 T-CGCGGAGTATTCGTCACAGGA------CGTGGTTTC-CAAGGACCGTC 385
| |.|.||..|| |||.|.|| | ||||| ||| .||||||
BPUM_2722___d 331 TGCACAGAACAT---TCAAAAGAACAAACC---GTTTCACAA-AACCGTC 373
BSNT_04488___ 386 CGATTGAAGAAGA------AA---CACCATTCGGGCAATTTGAATTTGAT 426
||||||||||.|| || |.||.|..||.|||||||||
BPUM_2722___d 374 CGATTGAAGAGGATTTATTAAGTCCGCCCTCAGGTCAATTTGAA------ 417
BSNT_04488___ 427 GATGATGAAGAAATCAGAGCGCCATATGACAGTGAGGATTCCTATCAGGA 476
.|||||||| ||.|||.||||.||..||||.|||.|.|||||.||
BPUM_2722___d 418 ---AATGAAGAA---AGTGCGGCATACGATGGTGAAGATGCATATCAAGA 461
BSNT_04488___ 477 TGTCGAAAAATATGGTAACTCACAAACGCCGCAGGATATGGAAAACCCTC 526
.||.|||...||.||.||.||..|.||||||...|||||||||...||||
BPUM_2722___d 462 CGTAGAACGGTACGGAAATTCTGATACGCCGTCCGATATGGAATTTCCTC 511
BSNT_04488___ 527 CGCTAAGCTA-TGACGATATGACGATG---------AATGCCGAAGA-GA 565
| | |||| |||.||.|||| ||| |.||||| ||
BPUM_2722___d 512 C--------ATTGAC-ATACGATGATGTGTATACACAAT-CAGAAGATGA 551
BSNT_04488___ 566 ATATCGGCAATA---CGGAGTCTTACGAAAATTTCATCGCTACAGATATC 612
|.|| || ||.||.| ||.||....|||...|||.|.|||||.
BPUM_2722___d 552 AGAT------TATGTCGAAGAC-TATGAGGGATTCGCAGCTGCTGATATT 594
BSNT_04488___ 613 ACTGGAAAAGAAATTACCGTTTATCAAAGCAGAGCCCATG-AGCGCTATG 661
...|||||||.||..|..||.||||.||..|.||||||.| ||| .||||
BPUM_2722___d 595 GAGGGAAAAGCAAGCAAGGTATATCCAAATAAAGCCCACGAAGC-TTATG 643
BSNT_04488___ 662 AAGAAGAACTTGACGAAGAGGGAATCATGACCACATTCGGCGATCTCCAC 711
||||||.|.|.||||||||.||..||||||||..|||.||.|||
BPUM_2722___d 644 AAGAAGCATTGGACGAAGAAGGCGTCATGACCGTATTTGGTGAT------ 687
BSNT_04488___ 712 GCTGATTGA----------------------------------------- 720
||||
BPUM_2722___d 688 -----TTGAAGCCGTACGAAGAAGAACCTTATACAGAAGAAAATCATTAG 732
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