Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04488 and BPUM_2722

See Amino acid alignment / Visit BSNT_04488 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:03
# Commandline: needle
#    -asequence dna-align/BSNT_04488___yteA.1.24716.seq
#    -bsequence dna-align/BPUM_2722___dksA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04488___yteA-BPUM_2722___dksA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04488___yteA-BPUM_2722___dksA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04488___yteA
# 2: BPUM_2722___dksA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 850
# Identity:     454/850 (53.4%)
# Similarity:   454/850 (53.4%)
# Gaps:         248/850 (29.2%)
# Score: 1166.0
# 
#
#=======================================

BSNT_04488___      1 TTG-CTTACGAAAGAACAGCTTCAGCATTT--------------------     29
                     ||| ||    |||||..|..|.||.|||||                    
BPUM_2722___d      1 TTGTCT----AAAGACGAATTACATCATTTGAAGCAGCGACTTCTCGATG     46

BSNT_04488___     30 -AAAAAATGAACTGGAACAAACGAAAAAAGATATCTTAAACCGTTTCAAA     78
                      |||..|||||||.|||     |..|||||                |.|.
BPUM_2722___d     47 AAAAGCATGAACTCGAA-----GCCAAAAG----------------CCAT     75

BSNT_04488___     79 GACAATGATCATTTTCAGCTTAACTCAGCATTTCCTTATGATTCGTG-GG    127
                     |||.||||.||         .||...|.|||||||||||||||| || .|
BPUM_2722___d     76 GACGATGAACA---------AAAAGTATCATTTCCTTATGATTC-TGTCG    115

BSNT_04488___    128 GTGAGCTTTCGGCATACGACAACCATCCCGGCGATCAGGCGACAGAACTT    177
                     |.||.||.||.||.||.||.||.||.||.||.|||||.|.|||||||||.
BPUM_2722___d    116 GAGATCTGTCAGCCTATGATAATCACCCAGGTGATCAAGGGACAGAACTG    165

BSNT_04488___    178 TACGAGCGTGAGAAAGACATCGCTCTAGACTTGCATGAGCGAGAGCACCT    227
                     |.|||.||.|.||||||.||.||..||.||             ||    |
BPUM_2722___d    166 TTCGAACGCGGGAAAGATATTGCATTAAAC-------------AG----T    198

BSNT_04488___    228 TCGGGACATTGAGCAT----------TCATTGAAG--------GCGATAG    259
                     |.||.||| |||.|||          |||.|||||        ||.||..
BPUM_2722___d    199 TTGGAACA-TGAACATCTGTTAGACATCAATGAAGCACTTCAAGCCATCA    247

BSNT_04488___    260 AAAACGGTACGTATGGC---------ATTTGTGAAGTC---AGCGGAAAG    297
                     .|.||||..|.||||||         .|.|||.|||.|   |.|..||||
BPUM_2722___d    248 CAGACGGCTCTTATGGCCAGTGCAAGGTCTGTAAAGCCCCTATCCCAAAG    297

BSNT_04488___    298 GAAATCCCGTTCGAACGACTTGAAGCGCTT-CCGACTGC---CACAACCC    343
                     |||    ||||        |.||||| ||| ||.|.|||   ||||    
BPUM_2722___d    298 GAA----CGTT--------TAGAAGC-CTTGCCTAGTGCCGTCACA----    330

BSNT_04488___    344 T-CGCGGAGTATTCGTCACAGGA------CGTGGTTTC-CAAGGACCGTC    385
                     | |.|.||..||   |||.|.||      |   ||||| ||| .||||||
BPUM_2722___d    331 TGCACAGAACAT---TCAAAAGAACAAACC---GTTTCACAA-AACCGTC    373

BSNT_04488___    386 CGATTGAAGAAGA------AA---CACCATTCGGGCAATTTGAATTTGAT    426
                     ||||||||||.||      ||   |.||.|..||.|||||||||      
BPUM_2722___d    374 CGATTGAAGAGGATTTATTAAGTCCGCCCTCAGGTCAATTTGAA------    417

BSNT_04488___    427 GATGATGAAGAAATCAGAGCGCCATATGACAGTGAGGATTCCTATCAGGA    476
                        .||||||||   ||.|||.||||.||..||||.|||.|.|||||.||
BPUM_2722___d    418 ---AATGAAGAA---AGTGCGGCATACGATGGTGAAGATGCATATCAAGA    461

BSNT_04488___    477 TGTCGAAAAATATGGTAACTCACAAACGCCGCAGGATATGGAAAACCCTC    526
                     .||.|||...||.||.||.||..|.||||||...|||||||||...||||
BPUM_2722___d    462 CGTAGAACGGTACGGAAATTCTGATACGCCGTCCGATATGGAATTTCCTC    511

BSNT_04488___    527 CGCTAAGCTA-TGACGATATGACGATG---------AATGCCGAAGA-GA    565
                     |        | |||| |||.||.||||         ||| |.||||| ||
BPUM_2722___d    512 C--------ATTGAC-ATACGATGATGTGTATACACAAT-CAGAAGATGA    551

BSNT_04488___    566 ATATCGGCAATA---CGGAGTCTTACGAAAATTTCATCGCTACAGATATC    612
                     |.||      ||   ||.||.| ||.||....|||...|||.|.|||||.
BPUM_2722___d    552 AGAT------TATGTCGAAGAC-TATGAGGGATTCGCAGCTGCTGATATT    594

BSNT_04488___    613 ACTGGAAAAGAAATTACCGTTTATCAAAGCAGAGCCCATG-AGCGCTATG    661
                     ...|||||||.||..|..||.||||.||..|.||||||.| ||| .||||
BPUM_2722___d    595 GAGGGAAAAGCAAGCAAGGTATATCCAAATAAAGCCCACGAAGC-TTATG    643

BSNT_04488___    662 AAGAAGAACTTGACGAAGAGGGAATCATGACCACATTCGGCGATCTCCAC    711
                     ||||||.|.|.||||||||.||..||||||||..|||.||.|||      
BPUM_2722___d    644 AAGAAGCATTGGACGAAGAAGGCGTCATGACCGTATTTGGTGAT------    687

BSNT_04488___    712 GCTGATTGA-----------------------------------------    720
                          ||||                                         
BPUM_2722___d    688 -----TTGAAGCCGTACGAAGAAGAACCTTATACAGAAGAAAATCATTAG    732


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