Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04485 and BPUM_2718
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:03
# Commandline: needle
# -asequence dna-align/BSNT_04485___menD.1.24716.seq
# -bsequence dna-align/BPUM_2718___menD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04485___menD-BPUM_2718___menD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04485___menD-BPUM_2718___menD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04485___menD
# 2: BPUM_2718___menD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1931
# Identity: 1177/1931 (61.0%)
# Similarity: 1177/1931 (61.0%)
# Gaps: 379/1931 (19.6%)
# Score: 3294.5
#
#
#=======================================
BSNT_04485___ 1 TTG-ACAGTCAACCCGATTACT-----CATTACATCGGAAGTTTTATTGA 44
||| |.|.||| ||||| | || ||.||.||.||.||.||.||
BPUM_2718___m 1 TTGAATAATCA----GATTA-TGACAACA-TATATTGGCAGATTGATGGA 44
BSNT_04485___ 45 TGAATTCGCCCTTTCCGGAA------TTAC-GGACGCCGTCGTTTGTCCG 87
||||||.|.|| || .||| .||.||.||.||.|||||.
BPUM_2718___m 45 TGAATTTGTCC-------AAGGTGGCGTACAAGAGGCAGTTGTCTGTCCA 87
BSNT_04485___ 88 GGCTCAAGATCTACACCGCTGGC--TGTT--CTTTGTGCTGCGCATCCCG 133
||.||..|.||.||.|||||.|| |||| ||.| |||.||.|..|
BPUM_2718___m 88 GGTTCTCGTTCAACCCCGCTTGCAATGTTGGCTCT----TGCCCACCAAG 133
BSNT_04485___ 134 ATATCAGCGTCCATGTCCAAATT----GATGAAAGATCTGCCGGGTTTTT 179
|.||||..|||||||| ||| ||||||||.|||||.|..||||.
BPUM_2718___m 134 ACATCAATGTCCATGT----ATTAGTGGATGAAAGGTCTGCTGCTTTTTA 179
BSNT_04485___ 180 TGCCTTAGGTTTGGCAAAAGCGAAG-CAGCGTCCCGTACTATTGATCTGT 228
|||..|||||.|.||.||||| ||| ||....||.||.||..|.||.|||
BPUM_2718___m 180 TGCGCTAGGTCTCGCGAAAGC-AAGTCAAACCCCAGTGCTGCTTATTTGT 228
BSNT_04485___ 229 ACATCTGGAACAGCCGCGGCTAACTTTTATCCGGCTGTGGTTGAAGCCCA 278
|||||.||.|||||.||.||||||||||||||.||..|.||.||.||.||
BPUM_2718___m 229 ACATCAGGTACAGCAGCTGCTAACTTTTATCCAGCCATTGTAGAGGCACA 278
BSNT_04485___ 279 TTATTCAAGGGTGCCTATTATTGTGTTAACTGCTGATCGGCCTCATGAGC 328
||||||..|.||.||..|||||||.|||||||||||||||||.||.||..
BPUM_2718___m 279 TTATTCCCGTGTCCCACTTATTGTTTTAACTGCTGATCGGCCGCACGAAT 328
BSNT_04485___ 329 TGCGCGAAGTAGGCGCACCGCAGGCTATTAATCAGCACTTCTTATTCGGT 378
||.|.|||||.||.|||||.||.||.|||.|||||||.||||||||||||
BPUM_2718___m 329 TGAGGGAAGTTGGAGCACCTCAAGCGATTGATCAGCAATTCTTATTCGGT 378
BSNT_04485___ 379 AACTTTGTTAAGTTTTTCACAGACTCTGCTCTTCCTGAAG--AGTCTCCG 426
||.||||||||.|..||||||||||..||..|.||.|||| ||||
BPUM_2718___m 379 AAGTTTGTTAAATGGTTCACAGACTTAGCATTGCCAGAAGAAAGTC---- 424
BSNT_04485___ 427 CAAATGCTGAGATACATCCGA----ACGCT-------GGCAAGCCGCGCT 465
|||| || ||||| |.| |||.|||
BPUM_2718___m 425 ---------AGAT------GATGTTACGCTATGTTCAGAC-AGCGGCG-- 456
BSNT_04485___ 466 GCCGGAG--AAGCACA--------AAAGCGCCCAATGGGGCCTGTCCATG 505
||..||| ||.||.| .|||.|||.|| |||.|||||.||..
BPUM_2718___m 457 GCAAGAGCAAATCATATGTCGATGCAAGAGCCGAA-GGGACCTGTACAAA 505
BSNT_04485___ 506 TGAATGTGCCGCTGCGCGAACCGCTGATGCCGGATCTTTCAGATGAGCCG 555
|.|||||.||.|||.|.|||||..||.|.||.|||.|.||...|.|.||
BPUM_2718___m 506 TCAATGTCCCTCTGAGAGAACCATTGCTTCCTGATTTGTCTATTCATCC- 554
BSNT_04485___ 556 TTTGGA---AGAATGAGAACAGGCCGTCATGTATCTGTGAAAACGGGTA- 601
|||.|| |||| || |||||.|| |||||..||||
BPUM_2718___m 555 TTTCGACAGAGAA-GA-AACAGACC-------------GAAAAAAGGTAT 589
BSNT_04485___ 602 ---------CGCAGTC---------TGTTGACCGCGAGTCCCTGTCTGA- 632
..|||.| ||.||| .||| ||.|||||
BPUM_2718___m 590 TAGCTACAGGACAGGCTTACCCAAATGATGA-TGCG-----CTATCTGAA 633
BSNT_04485___ 633 --TGTGGC-----TGAGATGCTCGCAGAGGCTGAAAAAGGAATGATCGTC 675
||||.| |||...|.|| || ||||.|||.||||.||.
BPUM_2718___m 634 ATTGTGACGGTCATGAACCGTTC-CA-------AAAAGGGACTGATTGTG 675
BSNT_04485___ 676 TGCGGAGAGCTCCATAGTGATGTGGATAAGGAAAA----CATTATTACG- 720
||.||||||||.||||.|.| || |||.|||| ||.|.|||||
BPUM_2718___m 676 TGTGGAGAGCTTCATACTCA----GA-AAGAAAAAGAGGCAGTGTTACGT 720
BSNT_04485___ 721 CTGTCAAAAGCGCTT-CAGTATCCAATTTTAGCGGATCCGCTGTCTAATC 769
||.||||||| .||| ||...|||||||||||||||.||.||.|||.||.
BPUM_2718___m 721 CTTTCAAAAG-ACTTGCATCTTCCAATTTTAGCGGACCCACTTTCTCATT 769
BSNT_04485___ 770 TGCGGAATGGTGTTCATGATAAAAGCACTG---------TTATTGATGCG 810
||||.||||| ||||| |||| || |.|||||||||
BPUM_2718___m 770 TGCGAAATGG---TCATG-----AGCA-TGCAGAGCTTATAATTGATGCG 810
BSNT_04485___ 811 TATGATTCGTTTTTAAAAGATGATAAGC--TGAAGCGGAAAC-----TTC 853
||||||||.||.|||||||||| |||| ||.||| ||| ||
BPUM_2718___m 811 TATGATTCTTTATTAAAAGATG--AAGCATTGCAGC---AACACCTATT- 854
BSNT_04485___ 854 GTCCTGATGTTGTCATTCGGTTTGGACCGATGCCTGTTTCAAAACCGGTT 903
.||.|||.|.||.|||||.|||||||||||||||||.||.||.||..|.
BPUM_2718___m 855 -GCCGGATATGGTGATTCGTTTTGGACCGATGCCTGTGTCTAAGCCTTTA 903
BSNT_04485___ 904 TTCTTATGGCTTAAGGATGATCCG---GCGATTCAGCAAATCGTGATTGA 950
|||..||||||..|..|..||.|| |.||.|||| ||.||..||||
BPUM_2718___m 904 TTCAAATGGCTGGAAAAACATGCGGAAGTGAATCAG---ATTGTTGTTGA 950
BSNT_04485___ 951 CGAGGATGGAGGCTGGAGAGATCC--GACGCAGGTAAGCGC-GCAT--AT 995
.|..|.||||||.|...||||||| ||| |.||.|| .||| ||
BPUM_2718___m 951 TGCTGCTGGAGGTTTTCGAGATCCTGGAC-----TGAGTGCTTCATACAT 995
BSNT_04485___ 996 GATTCATTGTAATGCGTCTGTTTTTGCTGAGGAGATCATGGCAGGCCTTA 1045
.|||.|..||.|||.|.|.|.|||||..||.|| .|.||.|..||
BPUM_2718___m 996 CATTGAAAGTGATGTGGCAGCTTTTGTAGATGA------AGTAGTCAATA 1039
BSNT_04485___ 1046 CTGCTGCCAGATCCTCAGAGTGGCTGGAAAAGTGGCAGTTTGTCAATGGG 1095
..| ||||||..| |.|.||.| |.|||| |||.|.|||
BPUM_2718___m 1040 GAG----CAGATCAAC-GTGAGGAT--ACAAGT-----TTTCTAAAT--- 1074
BSNT_04485___ 1096 CGGTTCCGCGAGCATC-TGCAAA-----CAATCAGCA------------- 1126
|||..|||.| |||.|| ||.||||.|
BPUM_2718___m 1075 ------CGCTGGCAGCATGCTAATTCATCATTCAGAACGCATGCATCTCA 1118
BSNT_04485___ 1127 --------GTGAAGATGTTTCGTTTGAAGGCAATCTCTATCGAATC--CT 1166
.|||.|||.|.||.|||||.||.|||.|.||.|| || ||
BPUM_2718___m 1119 TTATTCTGATGAGGATCTGTCATTTGAGGGGAATGTGTACCG--TCAGCT 1166
BSNT_04485___ 1167 TCAGCATCTTGTGCCTGAA-AACAGCTCGCTGTTTGTGGGAAACAGCATG 1215
|||||||||..|.|| ||| .|.||....||.|||.|.|||||.||.|||
BPUM_2718___m 1167 TCAGCATCTCTTACC-GAAGGAGAGTGTTCTTTTTATCGGAAATAGTATG 1215
BSNT_04485___ 1216 CCGATCAGGGATGTTGATACGTTTTTTGAAAAGCAGGACC---GCCCTTT 1262
|||||..|.|||||.||||||||||||| |||||..|.| |||.|||
BPUM_2718___m 1216 CCGATTCGTGATGTGGATACGTTTTTTG--AAGCACAATCGAAGCCTTTT 1263
BSNT_04485___ 1263 CCGGATTTAT-TCAAACCGGGGAGCAAACGGGATAGACGGTGTCGTCTCC 1311
| ||.|.|| .|.||.||.||.|||||.||.|||||.||.|||||.||.
BPUM_2718___m 1264 C--GAATGATGGCGAATCGAGGCGCAAATGGTATAGATGGCGTCGTGTCT 1311
BSNT_04485___ 1312 TCTGCCATGGG--GGTATG------TGAAGGAACAAAAGCGCCTGTTACC 1353
.|.||..|.|| .||||| ||| |||| |||.||.|||
BPUM_2718___m 1312 ACAGCACTTGGCACGTATGCAGCTTTGA---AACA-----GCCAGTCACC 1353
BSNT_04485___ 1354 CTTGTGATTGGAGATTTATCTTTTTATCACGATTTAAACGGCCTGCTGGC 1403
.|.|||||||||||||||||.|||||.||.|||.|.||.||.||.||.||
BPUM_2718___m 1354 TTAGTGATTGGAGATTTATCATTTTACCATGATATGAATGGTCTTCTTGC 1403
BSNT_04485___ 1404 GGCCAAAAAGCTGGGTATTCCTCTTACTGTGATTCTTGTCAATAATGACG 1453
.||.|||..|.|||..|||||.||.||.||..|.||..|.||.|||||.|
BPUM_2718___m 1404 AGCTAAATTGATGGACATTCCACTGACGGTTGTGCTGTTAAACAATGATG 1453
BSNT_04485___ 1454 GAGGAGGGA--TTTTC--TCCTTTTTGCCGCAGGCTTCTGAAAAGACACA 1499
|||||||.| ||||| ||||| ||||||||.|||||..|..|..|
BPUM_2718___m 1454 GAGGAGGCATCTTTTCGTTCCTT----CCGCAGGCGTCTGAGGAACCGTA 1499
BSNT_04485___ 1500 CTTTGAAGATTTGTTCGGCACACCGACAGGGCTCGATTTCAAGCATGCCG 1549
.|.||||.|..|.||.||.||||||||.||.||..||||..||.||||..
BPUM_2718___m 1500 TTATGAAAAACTCTTTGGTACACCGACTGGACTGAATTTTGAGTATGCTT 1549
BSNT_04485___ 1550 CTGCACTTTACGGCGGAACGTATTCATGCCCGGCTTCTTGGGATGAA--- 1596
||...||.||.||.|||||.||||| |||
BPUM_2718___m 1550 CTAAGCTGTATGGGGGAACCTATTC-------------------GAAACC 1580
BSNT_04485___ 1597 TTCA---AAACA--------------GCT-TACGCGCCGCAGGC------ 1622
|||| ||||| .|| || ||||
BPUM_2718___m 1581 TTCAACGAAACAAGAATTCCATGATGTCTATA--------AGGCACATAT 1622
BSNT_04485___ 1623 AGACAAGCCCGGACTCCATTTGATTGAAATCAAAACGGATCGCCAATCAA 1672
|||..||||.|||||.|||||.||||||||..||||.|||||.||.||..
BPUM_2718___m 1623 AGAAGAGCCTGGACTTCATTTAATTGAAATTGAAACAGATCGGCATTCTC 1672
BSNT_04485___ 1673 GAGT---CCAGCTTCATCGCGATATGCTGAATGAGGCTGTGC-----GG- 1713
|.|| |.|| |||||..|.|||.||.|||| | ||
BPUM_2718___m 1673 GTGTAAGCAAG---CATCGTCAAATGATGGATGA-------CATATTGGA 1712
BSNT_04485___ 1714 -GAAGTGAAAAAACAATGGGAACTGTAA--- 1740
||||||||||||.||||....||.|.|
BPUM_2718___m 1713 AGAAGTGAAAAAAGAATGTCTTCTTTCATAA 1743
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