Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04480 and BPUM_2715

See Amino acid alignment / Visit BSNT_04480 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:03
# Commandline: needle
#    -asequence dna-align/BSNT_04480___menE.1.24716.seq
#    -bsequence dna-align/BPUM_2715___menE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04480___menE-BPUM_2715___menE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04480___menE-BPUM_2715___menE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04480___menE
# 2: BPUM_2715___menE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1601
# Identity:     977/1601 (61.0%)
# Similarity:   977/1601 (61.0%)
# Gaps:         280/1601 (17.5%)
# Score: 2709.0
# 
#
#=======================================

BSNT_04480___      1 ATGCTGACAGAACAGCCCAACTGGCTCATGCAGCGGGCACAGCTGACACC     50
                     |||.|||   |.||.||.||.|||||..|.||.||.||..|..|.|||||
BPUM_2715___m      1 ATGATGA---AGCAACCGAATTGGCTGCTCCACCGTGCTTATGTAACACC     47

BSNT_04480___     51 TGAGAGAATCGCTCTCATCTATAGAGACCAAACCGTGACATTTGCAGAAT    100
                     .||.|||.||||.|||||.|||..|||..|||....||||||        
BPUM_2715___m     48 AGAAAGAGTCGCGCTCATTTATCAAGATAAAAAATGGACATT--------     89

BSNT_04480___    101 TATTTGCCGCGTCTAAGCGAATGGCGGCA--CAGCTTGC-----------    137
                           |||||..|.|||..|||..|.||  .|||||.|           
BPUM_2715___m     90 ------CCGCGATTTAGCTGATGAAGTCAATGAGCTTTCAAATAGACTTG    133

BSNT_04480___    138 CGC-----TCATTCGGTTCGAAAAGGGGA--TACTGCGGCTATTTTGCTC    180
                     |.|     ||||    |...|||||||||  .|.|..|||  ||.||.|.
BPUM_2715___m    134 CACAAACATCAT----TAAAAAAAGGGGAAGCAGTCGGGC--TTCTGATG    177

BSNT_04480___    181 CAAAACCGTGCAGAAATGGT-ATACGC-CGTTCACGCTTGTTTTTTGCTT    228
                     .|.||.|.|.|..||||||| ||  || .|||||.||||||||||...|.
BPUM_2715___m    178 AACAATCATCCTCAAATGGTGAT--GCTTGTTCATGCTTGTTTTTCATTA    225

BSNT_04480___    229 GGTGTTAAGGCGGTGCTTTTGAATACGAAGCTGTCAACACATGAAAGGCT    278
                     ||..|.||....||.||.|||||.|..|||.|..|||.|...|||||.|.
BPUM_2715___m    226 GGATTCAAAATCGTTCTATTGAACAATAAGTTAACAAAAGCGGAAAGACG    275

BSNT_04480___    279 GTTTCAGCTGGAGGATTCCGAATC--CGGCTT--TTTACTGA--------    316
                     .|||||.||.||.|||....||.|  |.||||  ||||||||        
BPUM_2715___m    276 CTTTCAACTTGAAGATGTAAAAGCAGCCGCTTTATTTACTGAACCTGTTT    325

BSNT_04480___    317 ----CAGATTCAAACTTTGA-CAAGAAAGAGTATGAACACATCGTTCAAA    361
                         |||          ||| ||  .|||.|  |||||....||||.|.|
BPUM_2715___m    326 ATGCCAG----------TGATCA--TAAGGG--TGAACTTCCCGTTTATA    361

BSNT_04480___    362 CGATTGATGTGG--ATGAACTGATGAAAGAAGCAGCACAGGAAATTG---    406
                     |.||.||    |  ||.|.||       |||||||..||.||.|.||   
BPUM_2715___m    362 CAATGGA----GACATTACCT-------GAAGCAGGTCAAGAGAATGTAA    400

BSNT_04480___    407 ---AGATCCAA---GCTTATATGCAAATGGATGC-AACGGCAACGCTGAT    449
                        |.|||.||   |.||.|    .|.|.||..| |||.||.|||.|.||
BPUM_2715___m    401 AGAAAATCGAAAACGATTTT----GACTTGAACCAAACAGCGACGATCAT    446

BSNT_04480___    450 GTATACGTCGGGTACGACAGGAAAGCCC--AAGGGAGTTCAGCAAACGTT    497
                     ||||||.||.||.||.||||| |.||||  ||||| ||..||||||||||
BPUM_2715___m    447 GTATACATCCGGCACAACAGG-ACGCCCAAAAGGG-GTCGAGCAAACGTT    494

BSNT_04480___    498 CGGAAACCACTATTTC--AGTGCGGTGTCGTCCGCGCTTAATTTGGGTAT    545
                     .||.||.||  .||||  |||||.||.||.||.||.||.|||.||||..|
BPUM_2715___m    495 TGGTAATCA--TTTTCATAGTGCAGTTTCCTCTGCACTCAATATGGGCCT    542

BSNT_04480___    546 AACAGAACAAGACCGCTGGCTTATCGCATTGCCGCTCTTTCATATCAGCG    595
                     .|.|||..|.||.|||||||||||.|||.||||.||.||||||||.||||
BPUM_2715___m    543 CAGAGAGGATGATCGCTGGCTTATTGCACTGCCTCTTTTTCATATTAGCG    592

BSNT_04480___    596 GCTTGTCCGCATTATTTAAATCTGTGATCTATGGAATGACTGTCGTGCTT    645
                     |.||.|||||.||||||||.||||||||.|||||.|||||||||||.|||
BPUM_2715___m    593 GATTATCCGCTTTATTTAAGTCTGTGATTTATGGGATGACTGTCGTACTT    642

BSNT_04480___    646 CACCAG-CGTTTTTCCGTAAGCGATGT-GCTG--------GATTCTA-TC    684
                     ||.||| .||||          ||||| |.||        |.|||.| |.
BPUM_2715___m    643 CATCAGAAGTTT----------GATGTCGATGAAGTAATAGGTTCGATTG    682

BSNT_04480___    685 AACAGGCATGAAGTGACAATGATATCTGCGGTGCAGACTATGCTGGCCAG    734
                     |||| ||||...|||||.||||||||||..||.||.||.|||.|..||.|
BPUM_2715___m    683 AACA-GCATCGTGTGACGATGATATCTGTTGTCCAAACGATGTTATCCCG    731

BSNT_04480___    735 TCTTT---------TGGAAGAAACAAGCCGCTGCCCTGAATCCATCAGAT    775
                     |.|.|         ||||||||              ||  |||.||    
BPUM_2715___m    732 TTTATTAAGCAGACTGGAAGAA--------------TG--TCCGTC----    761

BSNT_04480___    776 GCATTCTT--------------CTCGGCGGCGGCCCTGCACCGCTGCCAT    811
                        |||||              .|.|||||.||.|||||.||..||.|..
BPUM_2715___m    762 ---TTCTTTGCGCTGTCTTTTATTAGGCGGAGGGCCTGCGCCTTTGGCGA    808

BSNT_04480___    812 TGCTTGAGGAATGCCGTGAGAAAGGATTCCCTGTCTTTCAGTCATATGGA    861
                     |||||.|.|||.||...||||||||.||||||||||||||.||.||.||.
BPUM_2715___m    809 TGCTTCAAGAAAGCAAAGAGAAAGGGTTCCCTGTCTTTCAATCGTACGGC    858

BSNT_04480___    862 ATGACAGAAACATGCTCGCAAATTGTTACCCTGTCGCCGGAATTCAGTAT    911
                     ||||||||.||.||.||.||||||||.|||||..||||.|||||.|||.|
BPUM_2715___m    859 ATGACAGAGACTTGTTCACAAATTGTGACCCTTGCGCCTGAATTTAGTGT    908

BSNT_04480___    912 GGAAAAGCTCGGATCTGCGGGGAAACCGCTGTTTTCGTGTGAAATCAAAA    961
                     .||||||||.|||||.|||||.||.||.||.|||..||||||..|.||||
BPUM_2715___m    909 AGAAAAGCTTGGATCAGCGGGAAAGCCCCTTTTTGGGTGTGAGCTGAAAA    958

BSNT_04480___    962 T---AGAGCGGGACGGACAGGTTTGTGAACCGTTTGAACACGGTGAAATC   1008
                     |   ||| .||.||  ||...|||||...||.|||||.||.||.|||||.
BPUM_2715___m    959 TTCAAGA-TGGTAC--ACGCATTTGTCGTCCTTTTGAGCATGGCGAAATT   1005

BSNT_04480___   1009 ATGGTCAAAGGCCCGAATGTCATGAAAAGCTATTTTAACCGGGA------   1052
                     |||||.|||||..|.|||||||||||..|.||..||.||||.||      
BPUM_2715___m   1006 ATGGTGAAAGGGGCAAATGTCATGAAGGGGTACCTTTACCGTGAAGAGTC   1055

BSNT_04480___   1053 GAGCGCAAACGAAGCCTCTTTTCAAAATGGCTGGCTGAAAACAGGTGATC   1102
                     ||.|||   .|..||||.|..||||   ||||||||||||||.||.|||.
BPUM_2715___m   1056 GACCGC---TGCTGCCTTTGATCAA---GGCTGGCTGAAAACGGGGGATA   1099

BSNT_04480___   1103 TTGGTTATTTGGACAATGAAGGCTTTTTATATGTATTAGACAGACGCTCA   1152
                     ||||.|||.||||..|.|||||.|||||||.|||..|.|||.|.||.|||
BPUM_2715___m   1100 TTGGCTATGTGGATGAGGAAGGTTTTTTATTTGTGCTTGACCGCCGTTCA   1149

BSNT_04480___   1153 GATCTGATCATATCCGGCGGAGAAAACATTTATCCGGCCGAAGTGGAGTC   1202
                     |||.||||.||.||.|||||.||.||.||||||||.||.|||.|.||..|
BPUM_2715___m   1150 GATTTGATTATTTCTGGCGGTGAGAATATTTATCCAGCTGAAATTGAAGC   1199

BSNT_04480___   1203 AGTGCTGCTTTCACATCCCGC-TGTGGCCGAAGCCGGGGTTTCAGGGGCT   1251
                     .||.|||.|..||||| .||| |||....||||||||.||..| |||..|
BPUM_2715___m   1200 GGTCCTGTTAACACAT-TCGCATGTAAAGGAAGCCGGAGTGAC-GGGTAT   1247

BSNT_04480___   1252 -GAGGACAAAAAATGGGGGAAAGTGCCTCACGCCTATCTTGTC------C   1294
                      ||.||..|.|.||||||..|.||.||....||||.|||||||      |
BPUM_2715___m   1248 AGATGATGATAGATGGGGAGAGGTACCAGCTGCCTTTCTTGTCACAGATC   1297

BSNT_04480___   1295 TTCACAAACCTGTGAGCGCAGGAGAATTGA-CTGACTA--CTGTA---AA   1338
                     .|.|.|.|||          |||||| ||| ||  |||  ||.||   .|
BPUM_2715___m   1298 ATAAAATACC----------GGAGAA-TGAGCT--CTATGCTTTATGTGA   1334

BSNT_04480___   1339 GAACGC--TTGGCGAAGTATAAAATTCCGGCGAAATT---CTTTGTGCTT   1383
                     | .|||  .|.||.||.||||||...||.||....||   |||||||   
BPUM_2715___m   1335 G-TCGCATCTAGCAAAATATAAATGGCCTGCCTCTTTTCACTTTGTG---   1380

BSNT_04480___   1384 GACCGCCTGCCGCGCAATGCGTCTAATAAGCTCTTGC----GAAATCAG-   1428
                     |||...|||||..|.||||||||.|||||   .||||    |.|  ||| 
BPUM_2715___m   1381 GACGAGCTGCCAAGAAATGCGTCAAATAA---ATTGCAGAGGCA--CAGA   1425

BSNT_04480___   1429 CTGAAGGATGCGCGT-AAAGG-------AGAACTGCTATGA---------   1461
                     ||.||        || |||||       ||       ||||         
BPUM_2715___m   1426 CTCAA--------GTCAAAGGGGTTTTTAG-------ATGATTCAAATTG   1460

BSNT_04480___   1461 -   1461
                      
BPUM_2715___m   1461 A   1461


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.