Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04480 and BPUM_2715
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:03
# Commandline: needle
# -asequence dna-align/BSNT_04480___menE.1.24716.seq
# -bsequence dna-align/BPUM_2715___menE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04480___menE-BPUM_2715___menE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04480___menE-BPUM_2715___menE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04480___menE
# 2: BPUM_2715___menE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1601
# Identity: 977/1601 (61.0%)
# Similarity: 977/1601 (61.0%)
# Gaps: 280/1601 (17.5%)
# Score: 2709.0
#
#
#=======================================
BSNT_04480___ 1 ATGCTGACAGAACAGCCCAACTGGCTCATGCAGCGGGCACAGCTGACACC 50
|||.||| |.||.||.||.|||||..|.||.||.||..|..|.|||||
BPUM_2715___m 1 ATGATGA---AGCAACCGAATTGGCTGCTCCACCGTGCTTATGTAACACC 47
BSNT_04480___ 51 TGAGAGAATCGCTCTCATCTATAGAGACCAAACCGTGACATTTGCAGAAT 100
.||.|||.||||.|||||.|||..|||..|||....||||||
BPUM_2715___m 48 AGAAAGAGTCGCGCTCATTTATCAAGATAAAAAATGGACATT-------- 89
BSNT_04480___ 101 TATTTGCCGCGTCTAAGCGAATGGCGGCA--CAGCTTGC----------- 137
|||||..|.|||..|||..|.|| .|||||.|
BPUM_2715___m 90 ------CCGCGATTTAGCTGATGAAGTCAATGAGCTTTCAAATAGACTTG 133
BSNT_04480___ 138 CGC-----TCATTCGGTTCGAAAAGGGGA--TACTGCGGCTATTTTGCTC 180
|.| |||| |...||||||||| .|.|..||| ||.||.|.
BPUM_2715___m 134 CACAAACATCAT----TAAAAAAAGGGGAAGCAGTCGGGC--TTCTGATG 177
BSNT_04480___ 181 CAAAACCGTGCAGAAATGGT-ATACGC-CGTTCACGCTTGTTTTTTGCTT 228
.|.||.|.|.|..||||||| || || .|||||.||||||||||...|.
BPUM_2715___m 178 AACAATCATCCTCAAATGGTGAT--GCTTGTTCATGCTTGTTTTTCATTA 225
BSNT_04480___ 229 GGTGTTAAGGCGGTGCTTTTGAATACGAAGCTGTCAACACATGAAAGGCT 278
||..|.||....||.||.|||||.|..|||.|..|||.|...|||||.|.
BPUM_2715___m 226 GGATTCAAAATCGTTCTATTGAACAATAAGTTAACAAAAGCGGAAAGACG 275
BSNT_04480___ 279 GTTTCAGCTGGAGGATTCCGAATC--CGGCTT--TTTACTGA-------- 316
.|||||.||.||.|||....||.| |.|||| ||||||||
BPUM_2715___m 276 CTTTCAACTTGAAGATGTAAAAGCAGCCGCTTTATTTACTGAACCTGTTT 325
BSNT_04480___ 317 ----CAGATTCAAACTTTGA-CAAGAAAGAGTATGAACACATCGTTCAAA 361
||| ||| || .|||.| |||||....||||.|.|
BPUM_2715___m 326 ATGCCAG----------TGATCA--TAAGGG--TGAACTTCCCGTTTATA 361
BSNT_04480___ 362 CGATTGATGTGG--ATGAACTGATGAAAGAAGCAGCACAGGAAATTG--- 406
|.||.|| | ||.|.|| |||||||..||.||.|.||
BPUM_2715___m 362 CAATGGA----GACATTACCT-------GAAGCAGGTCAAGAGAATGTAA 400
BSNT_04480___ 407 ---AGATCCAA---GCTTATATGCAAATGGATGC-AACGGCAACGCTGAT 449
|.|||.|| |.||.| .|.|.||..| |||.||.|||.|.||
BPUM_2715___m 401 AGAAAATCGAAAACGATTTT----GACTTGAACCAAACAGCGACGATCAT 446
BSNT_04480___ 450 GTATACGTCGGGTACGACAGGAAAGCCC--AAGGGAGTTCAGCAAACGTT 497
||||||.||.||.||.||||| |.|||| ||||| ||..||||||||||
BPUM_2715___m 447 GTATACATCCGGCACAACAGG-ACGCCCAAAAGGG-GTCGAGCAAACGTT 494
BSNT_04480___ 498 CGGAAACCACTATTTC--AGTGCGGTGTCGTCCGCGCTTAATTTGGGTAT 545
.||.||.|| .|||| |||||.||.||.||.||.||.|||.||||..|
BPUM_2715___m 495 TGGTAATCA--TTTTCATAGTGCAGTTTCCTCTGCACTCAATATGGGCCT 542
BSNT_04480___ 546 AACAGAACAAGACCGCTGGCTTATCGCATTGCCGCTCTTTCATATCAGCG 595
.|.|||..|.||.|||||||||||.|||.||||.||.||||||||.||||
BPUM_2715___m 543 CAGAGAGGATGATCGCTGGCTTATTGCACTGCCTCTTTTTCATATTAGCG 592
BSNT_04480___ 596 GCTTGTCCGCATTATTTAAATCTGTGATCTATGGAATGACTGTCGTGCTT 645
|.||.|||||.||||||||.||||||||.|||||.|||||||||||.|||
BPUM_2715___m 593 GATTATCCGCTTTATTTAAGTCTGTGATTTATGGGATGACTGTCGTACTT 642
BSNT_04480___ 646 CACCAG-CGTTTTTCCGTAAGCGATGT-GCTG--------GATTCTA-TC 684
||.||| .|||| ||||| |.|| |.|||.| |.
BPUM_2715___m 643 CATCAGAAGTTT----------GATGTCGATGAAGTAATAGGTTCGATTG 682
BSNT_04480___ 685 AACAGGCATGAAGTGACAATGATATCTGCGGTGCAGACTATGCTGGCCAG 734
|||| ||||...|||||.||||||||||..||.||.||.|||.|..||.|
BPUM_2715___m 683 AACA-GCATCGTGTGACGATGATATCTGTTGTCCAAACGATGTTATCCCG 731
BSNT_04480___ 735 TCTTT---------TGGAAGAAACAAGCCGCTGCCCTGAATCCATCAGAT 775
|.|.| |||||||| || |||.||
BPUM_2715___m 732 TTTATTAAGCAGACTGGAAGAA--------------TG--TCCGTC---- 761
BSNT_04480___ 776 GCATTCTT--------------CTCGGCGGCGGCCCTGCACCGCTGCCAT 811
||||| .|.|||||.||.|||||.||..||.|..
BPUM_2715___m 762 ---TTCTTTGCGCTGTCTTTTATTAGGCGGAGGGCCTGCGCCTTTGGCGA 808
BSNT_04480___ 812 TGCTTGAGGAATGCCGTGAGAAAGGATTCCCTGTCTTTCAGTCATATGGA 861
|||||.|.|||.||...||||||||.||||||||||||||.||.||.||.
BPUM_2715___m 809 TGCTTCAAGAAAGCAAAGAGAAAGGGTTCCCTGTCTTTCAATCGTACGGC 858
BSNT_04480___ 862 ATGACAGAAACATGCTCGCAAATTGTTACCCTGTCGCCGGAATTCAGTAT 911
||||||||.||.||.||.||||||||.|||||..||||.|||||.|||.|
BPUM_2715___m 859 ATGACAGAGACTTGTTCACAAATTGTGACCCTTGCGCCTGAATTTAGTGT 908
BSNT_04480___ 912 GGAAAAGCTCGGATCTGCGGGGAAACCGCTGTTTTCGTGTGAAATCAAAA 961
.||||||||.|||||.|||||.||.||.||.|||..||||||..|.||||
BPUM_2715___m 909 AGAAAAGCTTGGATCAGCGGGAAAGCCCCTTTTTGGGTGTGAGCTGAAAA 958
BSNT_04480___ 962 T---AGAGCGGGACGGACAGGTTTGTGAACCGTTTGAACACGGTGAAATC 1008
| ||| .||.|| ||...|||||...||.|||||.||.||.|||||.
BPUM_2715___m 959 TTCAAGA-TGGTAC--ACGCATTTGTCGTCCTTTTGAGCATGGCGAAATT 1005
BSNT_04480___ 1009 ATGGTCAAAGGCCCGAATGTCATGAAAAGCTATTTTAACCGGGA------ 1052
|||||.|||||..|.|||||||||||..|.||..||.||||.||
BPUM_2715___m 1006 ATGGTGAAAGGGGCAAATGTCATGAAGGGGTACCTTTACCGTGAAGAGTC 1055
BSNT_04480___ 1053 GAGCGCAAACGAAGCCTCTTTTCAAAATGGCTGGCTGAAAACAGGTGATC 1102
||.||| .|..||||.|..|||| ||||||||||||||.||.|||.
BPUM_2715___m 1056 GACCGC---TGCTGCCTTTGATCAA---GGCTGGCTGAAAACGGGGGATA 1099
BSNT_04480___ 1103 TTGGTTATTTGGACAATGAAGGCTTTTTATATGTATTAGACAGACGCTCA 1152
||||.|||.||||..|.|||||.|||||||.|||..|.|||.|.||.|||
BPUM_2715___m 1100 TTGGCTATGTGGATGAGGAAGGTTTTTTATTTGTGCTTGACCGCCGTTCA 1149
BSNT_04480___ 1153 GATCTGATCATATCCGGCGGAGAAAACATTTATCCGGCCGAAGTGGAGTC 1202
|||.||||.||.||.|||||.||.||.||||||||.||.|||.|.||..|
BPUM_2715___m 1150 GATTTGATTATTTCTGGCGGTGAGAATATTTATCCAGCTGAAATTGAAGC 1199
BSNT_04480___ 1203 AGTGCTGCTTTCACATCCCGC-TGTGGCCGAAGCCGGGGTTTCAGGGGCT 1251
.||.|||.|..||||| .||| |||....||||||||.||..| |||..|
BPUM_2715___m 1200 GGTCCTGTTAACACAT-TCGCATGTAAAGGAAGCCGGAGTGAC-GGGTAT 1247
BSNT_04480___ 1252 -GAGGACAAAAAATGGGGGAAAGTGCCTCACGCCTATCTTGTC------C 1294
||.||..|.|.||||||..|.||.||....||||.||||||| |
BPUM_2715___m 1248 AGATGATGATAGATGGGGAGAGGTACCAGCTGCCTTTCTTGTCACAGATC 1297
BSNT_04480___ 1295 TTCACAAACCTGTGAGCGCAGGAGAATTGA-CTGACTA--CTGTA---AA 1338
.|.|.|.||| |||||| ||| || ||| ||.|| .|
BPUM_2715___m 1298 ATAAAATACC----------GGAGAA-TGAGCT--CTATGCTTTATGTGA 1334
BSNT_04480___ 1339 GAACGC--TTGGCGAAGTATAAAATTCCGGCGAAATT---CTTTGTGCTT 1383
| .||| .|.||.||.||||||...||.||....|| |||||||
BPUM_2715___m 1335 G-TCGCATCTAGCAAAATATAAATGGCCTGCCTCTTTTCACTTTGTG--- 1380
BSNT_04480___ 1384 GACCGCCTGCCGCGCAATGCGTCTAATAAGCTCTTGC----GAAATCAG- 1428
|||...|||||..|.||||||||.||||| .|||| |.| |||
BPUM_2715___m 1381 GACGAGCTGCCAAGAAATGCGTCAAATAA---ATTGCAGAGGCA--CAGA 1425
BSNT_04480___ 1429 CTGAAGGATGCGCGT-AAAGG-------AGAACTGCTATGA--------- 1461
||.|| || ||||| || ||||
BPUM_2715___m 1426 CTCAA--------GTCAAAGGGGTTTTTAG-------ATGATTCAAATTG 1460
BSNT_04480___ 1461 - 1461
BPUM_2715___m 1461 A 1461
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