Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04469 and BPUM_2710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:02
# Commandline: needle
# -asequence dna-align/BSNT_04469___ythA.1.24716.seq
# -bsequence dna-align/BPUM_2710.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04469___ythA-BPUM_2710.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04469___ythA-BPUM_2710.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04469___ythA
# 2: BPUM_2710
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1379
# Identity: 968/1379 (70.2%)
# Similarity: 968/1379 (70.2%)
# Gaps: 94/1379 ( 6.8%)
# Score: 3221.5
#
#
#=======================================
BSNT_04469___ 1 GTGGA-TGATTTAGTTTTGGCCAGAAGCCTTTTTGGCACGACGATGGGCT 49
|.|| ||||.|.|||||.||.||||||||.||.|||||.||.|||||||
BPUM_2710 1 -TTGACTGATCTCGTTTTAGCTAGAAGCCTGTTCGGCACAACCATGGGCT 49
BSNT_04469___ 50 TTCATATCATTTTCGCAACGCTTGGAGTCGGTCTCCCGCTCATGATTTTA 99
||||.||.||||..||..|||||||.|||||..|||||||.||||||||.
BPUM_2710 50 TTCACATTATTTATGCCTCGCTTGGCGTCGGCATCCCGCTAATGATTTTG 99
BSNT_04469___ 100 GTGGCGGAATTGATCTATCAAAAAACGAAAGATGACCATTATGCGATCAT 149
.|.||.|||.|.||||..|||||||||||||||...||.|||||..||||
BPUM_2710 100 TTAGCTGAACTCATCTTCCAAAAAACGAAAGATCCTCACTATGCTGTCAT 149
BSNT_04469___ 150 GGCGAAAAGATGGACGAAAGCACAAGCCGTTTTGCTGGGGGTCGCCATTC 199
|||||||.|.|||||||||||.||.||.||.|||.|.||.||||||||||
BPUM_2710 150 GGCGAAACGGTGGACGAAAGCGCAGGCTGTCTTGTTAGGTGTCGCCATTC 199
BSNT_04469___ 200 CGACCGGAACGATCGCGGGCACTCAGCTCGCGCTTTTATGGCCGGGATTT 249
|.||.||||||||.||.||.||.||||||||.|||.|||||||.||.|||
BPUM_2710 200 CAACAGGAACGATTGCTGGTACCCAGCTCGCTCTTCTATGGCCTGGTTTT 249
BSNT_04469___ 250 ATGGAAGTCATCGGCCGGGTGATGTCCCTGCCATTTCAAATTGAAATCTA 299
||||||||||||||....||.|||||.|||||||||||.||||||||.||
BPUM_2710 250 ATGGAAGTCATCGGAAAAGTCATGTCACTGCCATTTCAGATTGAAATTTA 299
BSNT_04469___ 300 TGCTTTTTTTGTTGAAGCCCTTTTCATGTCGATTTATGTATACGCAGCAG 349
|||.||.|||.|||||||..|.||.|||||.||||||||.||||||||.|
BPUM_2710 300 TGCGTTCTTTATTGAAGCATTATTTATGTCTATTTATGTGTACGCAGCGG 349
BSNT_04469___ 350 ACCGCTTATCACCTGCAATGAGGATTGTTGCTGTTTTCTTTGT-GTTAGT 398
|.|||.||||||||||.|||.|.|||.||.|.|||.|.||||| ||.| |
BPUM_2710 350 ATCGCCTATCACCTGCTATGCGCATTATTACCGTTATTTTTGTCGTGA-T 398
BSNT_04469___ 399 CGGGGCCGCAGCATCCGCTGTTCTGATCACGAATGTTCACGCTTTTGAAG 448
.||.||.||.||.||.||..|.||||||||.||.||.||.||.|||||||
BPUM_2710 399 TGGTGCAGCCGCTTCAGCGATCCTGATCACAAACGTACATGCATTTGAAG 448
BSNT_04469___ 449 GTACGCCCGCCGGTTTTAAAATTTTAAACGGAAAAATCACAGATGTTGAC 498
||||.||.||.||.|||.||||..|.||.|||.||||.||..||.||||.
BPUM_2710 449 GTACTCCTGCTGGCTTTCAAATGGTCAATGGAGAAATTACGAATATTGAG 498
BSNT_04469___ 499 CCGTGGGCCGCGTTTTTTAATCCTAGCTTTTTTATCACTGCCGGC-CATG 547
||.|||...||.|||||.|||||.|||||..|..|.|||| ||.| ||||
BPUM_2710 499 CCTTGGAAGGCCTTTTTCAATCCAAGCTTCGTCGTAACTG-CGACACATG 547
BSNT_04469___ 548 TCGTGCTGTCCGCGTTTATGACCGGTGCGTTTATCGTGGCTTCTGTTGCG 597
||||||||||.||.||||..||.|||||.|||.||.|.||.||.||.||.
BPUM_2710 548 TCGTGCTGTCTGCTTTTACAACAGGTGCTTTTGTCATTGCATCAGTAGCC 597
BSNT_04469___ 598 GCGTATAAAATGATCCGGACGAGGAAAAAGGAAAAGGTCTAT-CGCTTTC 646
||.|.|||||||.||...||.||.||.||.||.||..||||| || ||||
BPUM_2710 598 GCTTTTAAAATGCTCAAAACAAGAAAGAATGAGAAACTCTATACG-TTTC 646
BSNT_04469___ 647 ACCGGAAAGCCCTTTTGCTCGCACTGACGATCGGCGGTATTTTTTCATTG 696
|.||.|||||.|||||.||.|.|||.|...|.|||||..|.||.|||||.
BPUM_2710 647 ATCGAAAAGCTCTTTTTCTTGGACTCATTGTAGGCGGCCTCTTCTCATTT 696
BSNT_04469___ 697 CTGACCGCTTTGAACGGACATGAATCTGCACAGATGCTGTACGAATACCA 746
||.||.||..|.||.||.|||||.|||||.|||.|.|||||||||||.||
BPUM_2710 697 CTCACGGCCATAAATGGTCATGAGTCTGCTCAGCTTCTGTACGAATATCA 746
BSNT_04469___ 747 GCCCGAAAAATTAGCCGGTGCGGAAGGCCTGTTTGAAACAAGATCCCATG 796
|||.|||||.|||||.|||||.|||||..|.|||||||||..|||.||||
BPUM_2710 747 GCCTGAAAAGTTAGCAGGTGCTGAAGGTTTATTTGAAACACAATCACATG 796
BSNT_04469___ 797 CCCCGCTCGCTATCGGCGGTTTTACCGA-CCCGAATGAA--GAAAAAGTA 843
|.||.||.||.||.||.||||||||.|| .||||.|.|| |||| |.
BPUM_2710 797 CACCTCTTGCAATAGGTGGTTTTACTGATGCCGATTCAAAGGAAA---TT 843
BSNT_04469___ 844 AAATGGGCAATCGAGATTCCATGGGCTTTAAGCTTTTTGGCAGCGAACCG 893
|||.|.|||||.||.||.||.|||||..|.||.||..|.||||.|||..|
BPUM_2710 844 AAAGGAGCAATTGAAATCCCTTGGGCGCTTAGTTTCCTTGCAGGGAATAG 893
BSNT_04469___ 894 TTTTGACACTGTTGTAAAAGGATTAAATGCATTT-CCGAGAGATGAATGG 942
.|||||.||.||.||.|||||.||||||| |||| |||.|.||.||.|||
BPUM_2710 894 CTTTGATACAGTGGTCAAAGGCTTAAATG-ATTTCCCGCGTGACGAGTGG 942
BSNT_04469___ 943 CCGCCGCTTTTCATTCACACGCTGTTTAATGCGATGGTCGGTGTAGGCAT 992
||.||..|.||.||.||||||.|.|||||||..||||||..|.|.|
BPUM_2710 943 CCCCCTTTATTTATACACACGTTATTTAATGGCATGGTCATTATTG---- 988
BSNT_04469___ 993 GCTGCTTATTCTTTATTCCATTATCGGTG--------------TCGTCTG 1028
|||.|.||.|.|||...||..||||| ||||
BPUM_2710 989 ---GCTCAGTCCTCATTTTGTTTGCGGTGCTAGCACTGCTTTATCGT--- 1032
BSNT_04469___ 1029 GAGAAAGGTGCTCAAGAAA---GACCGTT-TCCCAACGTGG---CTTTTG 1071
|||..| |.| ||| ||.|.|| |||.|| |||| |||||.
BPUM_2710 1033 ---AAAATT--TTA--AAACGCGAACATTATCCGAA-GTGGCTCCTTTTT 1074
BSNT_04469___ 1072 GTC-----ATTTTCATGACAGCAGGCCCTTTTAGTCTCATCGGCATTGAA 1116
.|| ||| |.|| ||.||..|||||||..|.|..||||||
BPUM_2710 1075 CTCTACTTATT-------CGGC-GGACCCCTTAGTCTTTTAGCTATTGAA 1116
BSNT_04469___ 1117 TTCGGCTGGATTTTCGCATGTACGGGGAGACAGCCTTGGGTCATCTATCA 1166
|||||||||||.||.||.|||||.||..|.|||||.||||||||.||.|.
BPUM_2710 1117 TTCGGCTGGATCTTTGCCTGTACAGGCCGTCAGCCATGGGTCATTTACCG 1166
BSNT_04469___ 1167 TCTGCTGAAAACGTCAGATGTCGTAACAACGACTGGCTCGATTGG---GC 1213
..||||.|||||.|||||.|||||.|||.|..|.|||||.||||| .|
BPUM_2710 1167 AATGCTCAAAACCTCAGAGGTCGTCACATCATCAGGCTCAATTGGCACAC 1216
BSNT_04469___ 1214 TGCTGT-TCTTATTTTTCACATTTGTTTATGCCGTGTTAGGC---GCAGC 1259
| ||.| ||.|||||..|| |.||.|||..|.|.|||||| |||.|
BPUM_2710 1217 T-CTTTATCCTATTTGCCA---TCGTCTATCTCATCTTAGGCATAGCAAC 1262
BSNT_04469___ 1260 TGTCGTCTACGTGCTGCTGTATTATTTCCGCAAGCACCCGGTTGACGAAG 1309
|||..| .||||||..|||.||.||..|.||.||..||.||||.||||
BPUM_2710 1263 TGTGAT---TGTGCTGACGTACTACTTTAGAAAACATTCGATTGAAGAAG 1309
BSNT_04469___ 1310 A------TTTAAATACAGCGGAGTCGTAA 1332
| .|||| |.||.||.|||
BPUM_2710 1310 ACCTACGGTTAA------CAGAATCTTAA 1332
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