Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00506 and BPUM_2708
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:19
# Commandline: needle
# -asequence dna-align/BSNT_00506___ycdH.1.24716.seq
# -bsequence dna-align/BPUM_2708.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00506___ycdH-BPUM_2708.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00506___ycdH-BPUM_2708.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00506___ycdH
# 2: BPUM_2708
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1193
# Identity: 590/1193 (49.5%)
# Similarity: 590/1193 (49.5%)
# Gaps: 436/1193 (36.5%)
# Score: 1256.5
#
#
#=======================================
BSNT_00506___ 1 ------------------ATGTTTAAAAAATGGAG-CGGTTTGTTTGTGA 31
||||| ||| || .|.|||.||||.||
BPUM_2708 1 ATGAAAAAAATCTTTTATATGTT-----AAT--AGTTGCTTTATTTGCGA 43
BSNT_00506___ 32 ------TTGCAGCGTGCTTTTTATTAGTTGC-AGCA-TGCGGTAACTCAT 73
||||.||.|||| | |||| |||||..||..||
BPUM_2708 44 TCGGCCTTGCCGCTTGCT------------CAAGCAGTGCGGGCACAAAT 81
BSNT_00506___ 74 -CAACAAAAGGGTCGGCGGATTCAAAGGGTGAT---AAACTGCACGTTGT 119
|..||||||| |||.|..||| |||||...|||...
BPUM_2708 82 GCTTCAAAAGG------------AAAAGCAGATGGAAAACTAACCGTCTA 119
BSNT_00506___ 120 CACAACGTTCTACCCGATGTATGAATTCACAAAACAAATTGTAAAAGACA 169
|||.||..|.|.|||.||..|.||.|||||..||.|||||
BPUM_2708 120 CACCACTATTTTCCCTATTCAAGATTTCACTGAAAAAATT---------- 159
BSNT_00506___ 170 AAGGCGATGTGGATCTGTTAATCCCATCTTCCGTTGAACCGCATGATTGG 219
||||.| ||.|||.|| ||||
BPUM_2708 160 --GGCGGT-------------TCTCATGTT-----------CATG----- 178
BSNT_00506___ 220 GAACCGACGCCGAAAG-----ACATTGCTAACATTCAGGATG----CTGA 260
||| |||| ||..|||.| ||.|| |||| |.|.
BPUM_2708 179 -------CGC--AAAGCGTCTACCCTGCCA--ATGCA-GATGCACACAGC 216
BSNT_00506___ 261 TTT-------GTTC----------GTTTATAATAG-TGAA---------- 282
||| |||| |||.| |||.| ||||
BPUM_2708 217 TTTGAACCAAGTTCAAAAACGATGGTTGA-AATGGCTGAAGGTGACGCCT 265
BSNT_00506___ 283 -----TACATGGAGACATGGGTTCCG------TCAGCTGAAAAAAGC--- 318
|||| |.|.||..|||.|.| || |||||.||||.|
BPUM_2708 266 TCATCTACA--GCGGCACAGGTGCTGAAGCATTC-GCTGACAAAACCGCG 312
BSNT_00506___ 319 ---------ATGGGCCAAGGC-------CATGCCGTTTTCGTTAATGCAA 352
|..|.||||||| || ||.||.|||.
BPUM_2708 313 TCTACCTTAAAAGACCAAGGCGTGAAAACA----------GTCAAAGCAG 352
BSNT_00506___ 353 GCAAAGGTATTGATTT---------AATGGAAG-GC--TCTGAAGAAGAA 390
.|.||||.||..|.|| ||..|||| || ||..|.||||||
BPUM_2708 353 CCGAAGGCATCAAATTGTTATCGACAAAAGAAGAGCATTCACATGAAGAA 402
BSNT_00506___ 391 CACGAAGAGCATGATCATG--------GG----------GAGCATGA--- 419
.|.|||||.||||||||.| || ||.|||||
BPUM_2708 403 GAGGAAGATCATGATCACGATCATGAAGGAGAAGAACATGACCATGATGG 452
BSNT_00506___ 420 GCACAGTCATGCA---ATGGATCCTCACGTATGGCTCAG-CCCTGTTCTG 465
.|||..|||.|.| |..||||||||.|.|||| |.|| |||||||...
BPUM_2708 453 ACACGATCACGGAGATAAAGATCCTCATGCATGG-TTAGACCCTGTTTAT 501
BSNT_00506___ 466 GCACAGAAGGAA--GTTAAAAATATTACGGCTCAAATCGT-------GAA 506
||||||.| || |..|||||.||||..|.|..|.|||| ||.
BPUM_2708 502 GCACAGCA--AATGGCGAAAAACATTAAAGATACACTCGTTTCATTAGAT 549
BSNT_00506___ 507 GCAG--------GACCCGGATA-ACAAAGAATACTATGAGAAAAATAGTA 547
.||| || ||.||| |||| ||.||||||| ||||.|| |
BPUM_2708 550 CCAGATCATAAAGA--CGAATACACAA--AAAACTATGA-AAAACTA--A 592
BSNT_00506___ 548 AAGAATATATTGCAAAACTGCAGGATCTTGATAAACTATATC----GTAC 593
||.||.|| ||||| ||| .|||.||| ||.|
BPUM_2708 593 AAAAAGAT-TTGCA----------ATC-------GCTAGATCAAGAGTTC 624
BSNT_00506___ 594 AACCGCAAAA------AAAGCGGAGAAA----AAAGAA-------TTTAT 626
|| |.|||.| ||||| ||| |||||| |||..
BPUM_2708 625 AA-CACAACATTATCTAAAGC----AAAACATAAAGAAATCCTTGTTTCC 669
BSNT_00506___ 627 CACGCAGCATACAGCTTTTGGCTATCTGGCAAAAG-AATACGG-CTTGAA 674
||.|||||.||| ||.||| |||.||||| ..||||| .||| |
BPUM_2708 670 CATGCAGCCTAC-------GGTTAT-TGGGAAAAGCGCTACGGTATTG-A 710
BSNT_00506___ 675 GCAGGT----------------TCCGAT--TGCAGGGCTGTCACCTGACC 706
|||..| ||||.| ||.||.||..||||
BPUM_2708 711 GCAAATTAGTGTATTAGGATTATCCGCTTCTGAAGAGCCTTCAC------ 754
BSNT_00506___ 707 AAGAACCGAGCGCAGC----CAGC----TTGGCAAAGCTGAAAA-CATAT 747
|.|| ||||| .||| ||...||||||||||| |||
BPUM_2708 755 -AAAA------GCAGCTCGAAAGCATTGTTCAAAAAGCTGAAAAGCAT-- 795
BSNT_00506___ 748 GCCAAAGAACAT--AATGTAAAAGTTATTTACTTTGAAGAAATTGCATCC 795
.|||| ||| |.||.||| ||||||.| ||.|.
BPUM_2708 796 -------CACATTCAAT----ATGTGATT---TTTGAAAA-----CAACG 826
BSNT_00506___ 796 TCA-----AAGGTCGCAGATACGCTCGCCAGTGAAATCGGCGCGAAGA-- 838
||| ||.|||.||||||||.||..|||||||||.||.||.||.|
BPUM_2708 827 TCAGTAGCAAAGTCTCAGATACGATCCGCAGTGAAATTGGGGCAAAAAGC 876
BSNT_00506___ 839 ----------------CAGAAGTGCTGAATACACTGGAAGGCTTGA-GCA 871
.|||| |..||| ||| |||| .||| ||.
BPUM_2708 877 CTCACACTTAAAAATTTAGAA----TCTATA-ACT-GAAG--ATGACGCC 918
BSNT_00506___ 872 AAGAAGAACAGGATAAAGGT---TTAGGGTATATCGACATTATGAAACAA 918
|| ||..||..||||.| |||| |.|.|||||||||
BPUM_2708 919 AA----AAATGGCGAAAGCTACGTTAG----------CTTAATGAAACAA 954
BSNT_00506___ 919 AACCTCGATGCCCTGAAAGATTCACTATTGGTTAAATCATAA- 960
|||||..|..||.||||| |||..| ||||||.||.|
BPUM_2708 955 AACCTAAAGACCTTGAAA-----ACTGCT--TTAAATGATTAA 990
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