Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04467 and BPUM_2707

See Amino acid alignment / Visit BSNT_04467 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:01
# Commandline: needle
#    -asequence dna-align/BSNT_04467___ytiB.1.24716.seq
#    -bsequence dna-align/BPUM_2707___ytiB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04467___ytiB-BPUM_2707___ytiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04467___ytiB-BPUM_2707___ytiB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04467___ytiB
# 2: BPUM_2707___ytiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 579
# Identity:     410/579 (70.8%)
# Similarity:   410/579 (70.8%)
# Gaps:          30/579 ( 5.2%)
# Score: 1308.0
# 
#
#=======================================

BSNT_04467___      1 ATGAGTCTTCTAAATGATATTCTTGAATTTAA-CAAGACATTTACTGAAC     49
                     ||||..|||.||.|.||.||..|.||||.||| |||.| |||||.||||.
BPUM_2707___y      1 ATGAAACTTTTAGAAGAAATCATCGAATATAATCAACA-ATTTATTGAAG     49

BSNT_04467___     50 AAAGAG-AGTATGAAAAGTATCAAACATCAAAATTTCCAGATAAAAAA-A     97
                     ||| || |.||.|||.|||.|..||||.|.||.||||||.|.|||||| .
BPUM_2707___y     50 AAA-AGAAATACGAAGAGTTTACAACAACGAAGTTTCCACAGAAAAAAGC     98

BSNT_04467___     98 TGGCGATTCTTTCTTGCATGGACACTCGTCTGGTTGAACTGCTGCCGCAT    147
                     ||.| |||||.||.||.|||||.||..|.||.||.||.|||||.||.|.|
BPUM_2707___y     99 TGTC-ATTCTGTCATGTATGGATACAAGACTCGTCGAGCTGCTTCCACGT    147

BSNT_04467___    148 GCGATGAATTTGCGAAACGGTGATGTGAAAATCATTAAAAGTGCCGGTGC    197
                     ||.|||||..||..|||.||.|||.|.||.|||.|.||||||||.|||||
BPUM_2707___y    148 GCAATGAACATGAAAAATGGAGATATCAAGATCGTCAAAAGTGCTGGTGC    197

BSNT_04467___    198 GCTTGTGACACACCCATTCGGAAGCATCATGAGAAG---TTTACTCGTCG    244
                     .||||||.|.||.|||||.|||||.||.|||.||||   ||||   ||.|
BPUM_2707___y    198 TCTTGTGTCTCATCCATTTGGAAGTATTATGCGAAGCATTTTA---GTGG    244

BSNT_04467___    245 CAGTGTACGAGCTGAATGCAGATGAGGTGTGTGTGATCGGGCATCACGAT    294
                     |.||.|||||..|.|||||.||.|||||.|.|||.||.||.|||||.|||
BPUM_2707___y    245 CTGTTTACGAATTAAATGCTGACGAGGTTTATGTCATTGGACATCATGAT    294

BSNT_04467___    295 TGCGGCATGAGCAAAATCAG-CAGCAAAAGCATGCTTGAAAAAATCAAAG    343
                     |||||.||||||||||| || .|||.||| ||  |||..|||   |||||
BPUM_2707___y    295 TGCGGTATGAGCAAAAT-AGATAGCCAAA-CA--CTTTTAAA---CAAAG    337

BSNT_04467___    344 CAA------GAGGGATTCCGGAAGAACGCATCGAAACAATAAAGTACTCC    387
                     |.|      |.||.||.||.|||.||||.||.|||..|.|..|.|||||.
BPUM_2707___y    338 CCATTGAGCGGGGTATCCCAGAAAAACGGATTGAAGTACTGGAATACTCA    387

BSNT_04467___    388 GGTGTAGACTTTGATCAATGGTTTAAAAGCTTTGATTCAGTGGAAGCGAG    437
                     ||..|.||.|||.|.||.|||.|.|||||||||..|||.||.||||.|||
BPUM_2707___y    388 GGAATTGATTTTAAACAGTGGCTCAAAAGCTTTAGTTCGGTCGAAGAGAG    437

BSNT_04467___    438 TGTGAAAGACAGCGTAGACGTTATTAAACATCACCCGCTGTTCCCTGAAA    487
                     ||||||.|||||.||...||||.|.|||.|.||||||||..||||...||
BPUM_2707___y    438 TGTGAAGGACAGTGTGTCCGTTGTGAAAAACCACCCGCTCCTCCCATCAA    487

BSNT_04467___    488 ACGTTCCGGTCCATGG-CTTAGTCATTGATCCTAAAACCGGAAAACTGGA    536
                     |.||.||.||.||.|| ||| ||||||||||||..|||.||.||.||.||
BPUM_2707___y    488 ATGTGCCTGTGCACGGTCTT-GTCATTGATCCTGGAACTGGCAAGCTTGA    536

BSNT_04467___    537 TCTTA-TCGTAAACGGTTATAACAATTAA    564
                      |.|| ||||.|||||.|||.|.||.|||
BPUM_2707___y    537 -CGTAGTCGTTAACGGATATGAAAAGTAA    564


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.